EY720472

Overview
NameEY720472
Unique NameEY720472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11202 contig Csv1_Contig11202:2..396. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLMI_AERS4 (Ribosomal RNA large subunit methyltransferase I OS=Aeromonas salmonicida (strain A449) GN=rlmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 40/120 (33.33%), Postives = 69/120 (57.50%), Query Frame = -2
Query:   17 FLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGQLNP-QLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQRQYDLVLLDPPAWAKS 373
            +LD R+ R  V  +++ K VLN F+YT G G+ A  GGA+EV N+D ++  L + R+N +LN   +   +F++ D F  +R+       + +G+K           +D+++LDPP +A+S
Sbjct:  205 YLDQRDNRQAVSKYTSAKRVLNCFSYTGGFGIYALKGGAKEVVNVDLSQTALDMARQNAELNGLDISNTQFIRHDVFKLLREY------REKGEK-----------FDVIVLDPPKFAES 307          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLMI_AERHH (Ribosomal RNA large subunit methyltransferase I OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rlmI PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = -2
Query:   17 FLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGQLNP-QLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQRQYDLVLLDPPAWAKS 373
            +LD R+ R     ++ GK VLN F YT G G+ A  GGA+EV N+D ++  L + R+N +LN       +FV+ D F  +R+       + +G K           +D+++LDPP +A+S
Sbjct:  206 YLDQRDNRQAAAKYTEGKRVLNCFCYTGGFGVYALKGGAKEVVNVDLSQNALDIARQNAELNGLDTSNTQFVRHDVFKLLREY------REKGDK-----------FDVIVLDPPKFAES 308          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLML_PSYCK (Ribosomal RNA large subunit methyltransferase L OS=Psychrobacter cryohalolentis (strain K5) GN=rlmL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.720e-12
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = -2
Query:   17 DPLLFLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGREN---GQLNPQLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQRQYDLVLLDPPAWAKS 385
            D  LF+D RN R  +K +S  KSVLNLFAYTC   + AA  GA++V ++D ++  L  G++N     LN      +FV +D F  I+                     +  Q+D++ +DPP ++ S
Sbjct:  590 DTGLFIDHRNMRARIKDNSRNKSVLNLFAYTCTASVHAALAGAKKVTSVDLSQNYLDWGKQNFALNGLNVSSNKYQFVAADIFEWIKD--------------------NTEQFDIIFIDPPTFSNS 695          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLML_PSYWF (Ribosomal RNA large subunit methyltransferase L OS=Psychrobacter sp. (strain PRwf-1) GN=rlmL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = -2
Query:   17 DPLLFLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGQLNPQLPT---MEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQRQYDLVLLDPPAWAKS 385
            D  LF+D RN R  +++ S G  VLNLFAYTC   + AA GGA+ V ++D ++  L  G++N  LN    T    +F+ SD F  I+                     +  Q+D++ +DPP ++ S
Sbjct:  623 DTGLFIDHRNMRSMIRSASRGADVLNLFAYTCTASVHAALGGAKSVTSVDLSQNYLDWGKQNFALNGLDVTTSRYQFIASDIFDWIKD--------------------NTDQFDVIFIDPPTFSNS 728          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLML_PSYA2 (Ribosomal RNA large subunit methyltransferase L OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rlmL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = -2
Query:   17 DPLLFLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGREN---GQLNPQLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQRQYDLVLLDPPAWAKS 385
            D  LF+D RN R  +K +S  KSVLNLFAYTC   + AA  GA++V ++D ++  L  G++N     LN      +FV +D F  I+                     +  Q+D++ +DPP ++ S
Sbjct:  582 DTGLFIDHRNMRARIKDNSRNKSVLNLFAYTCTASVHAALAGAKKVTSVDLSQNYLDWGKQNFALNGLNVSGNKYQFVAADIFEWIKD--------------------NTEQFDIIFIDPPTFSNS 687          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLML_HAHCH (Ribosomal RNA large subunit methyltransferase L OS=Hahella chejuensis (strain KCTC 2396) GN=rlmL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 40/123 (32.52%), Postives = 58/123 (47.15%), Query Frame = -2
Query:   17 DPLLFLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGQLNPQLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQRQYDLVLLDPPAWAKS 385
            D  LFLD R TR W++ HS+GK  LNLF YT    + AAAGGA    ++D ++  L+    N  LN       FV+++                       + + +   YDL+ LDPP ++ S
Sbjct:  536 DSGLFLDHRPTRYWIQKHSSGKRFLNLFCYTGAASVHAAAGGAATTTSVDMSQTYLSWAERNFHLNKLSGPHRFVRANVL--------------------DWLKAEHNSYDLIFLDPPTFSNS 638          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLML_ALTMD (Ribosomal RNA large subunit methyltransferase L OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rlmL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 44/123 (35.77%), Postives = 62/123 (50.41%), Query Frame = -2
Query:   17 DPLLFLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGQLNPQLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQRQYDLVLLDPPAWAKS 385
            D  LFLD RNTR  VKA S GK VLNLF+YT  V + AA GGA+ V  +D +   L   ++N  LN       F+Q+D                      ++    + +YDL+ +DPP+++ S
Sbjct:  518 DTGLFLDHRNTRQKVKALSQGKDVLNLFSYTGSVSVFAAMGGAKSVTTVDMSNTYLDWAKKNVALNKLSGPHAFIQAD--------------------CTTWLGTHKGKYDLIFIDPPSFSNS 620          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLML_SHESR (Ribosomal RNA large subunit methyltransferase L OS=Shewanella sp. (strain MR-7) GN=rlmL PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 49/125 (39.20%), Postives = 62/125 (49.60%), Query Frame = -2
Query:   17 DPLLFLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGQLNP-QLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQ-RQYDLVLLDPPAWAKS 385
            D  LFLD R TR  V   S G+ VLNLF+YT    + AA GGA+ V  +D +   LA  +EN  LN       EFVQ+D    IR  A                 LD+  QYDL+ +DPP ++ S
Sbjct:  526 DTGLFLDHRLTRRLVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYLAWAKENFALNDLSGKQYEFVQADCLQWIRDSA-----------------LDKSAQYDLIFIDPPTFSNS 633          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLML_SHESM (Ribosomal RNA large subunit methyltransferase L OS=Shewanella sp. (strain MR-4) GN=rlmL PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 49/125 (39.20%), Postives = 62/125 (49.60%), Query Frame = -2
Query:   17 DPLLFLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGQLNP-QLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQ-RQYDLVLLDPPAWAKS 385
            D  LFLD R TR  V   S G+ VLNLF+YT    + AA GGA+ V  +D +   LA  +EN  LN       EFVQ+D    IR  A                 LD+  QYDL+ +DPP ++ S
Sbjct:  526 DTGLFLDHRLTRRLVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYLAWAKENFALNDLSGKQYEFVQADCLQWIRDSA-----------------LDKSAQYDLIFIDPPTFSNS 633          
BLAST of EY720472 vs. ExPASy Swiss-Prot
Match: RLML_SHEB9 (Ribosomal RNA large subunit methyltransferase L OS=Shewanella baltica (strain OS195) GN=rlmL PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 46/124 (37.10%), Postives = 59/124 (47.58%), Query Frame = -2
Query:   17 DPLLFLDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGQLNP-QLPTMEFVQSDYFPAIRQLAGLPISQRRGQKLPSYPRLDQRQYDLVLLDPPAWAKS 385
            D  LFLD R TR  V   S G+ VLNLF+YT    + AA GGA+ V  +D +   +A  ++N  LN  Q    EFVQSD    IR                        QYDL+ +DPP ++ S
Sbjct:  526 DTGLFLDHRLTRRLVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYIAWAKDNFALNGLQGKQYEFVQSDCMQWIRDC--------------------NEQYDLIFIDPPTFSNS 629          
The following BLAST results are available for this feature:
BLAST of EY720472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RLMI_AERS41.354e-1233.33Ribosomal RNA large subunit methyltransferase I OS... [more]
RLMI_AERHH3.016e-1234.17Ribosomal RNA large subunit methyltransferase I OS... [more]
RLML_PSYCK6.720e-1233.33Ribosomal RNA large subunit methyltransferase L OS... [more]
RLML_PSYWF8.776e-1233.33Ribosomal RNA large subunit methyltransferase L OS... [more]
RLML_PSYA21.146e-1133.33Ribosomal RNA large subunit methyltransferase L OS... [more]
RLML_HAHCH2.553e-1132.52Ribosomal RNA large subunit methyltransferase L OS... [more]
RLML_ALTMD2.553e-1135.77Ribosomal RNA large subunit methyltransferase L OS... [more]
RLML_SHESR4.355e-1139.20Ribosomal RNA large subunit methyltransferase L OS... [more]
RLML_SHESM4.355e-1139.20Ribosomal RNA large subunit methyltransferase L OS... [more]
RLML_SHEB97.429e-1137.10Ribosomal RNA large subunit methyltransferase L OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-H10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720472 ID=EY720472; Name=EY720472; organism=Citrus sinensis; type=EST; length=395bp
CCACGGTGCCGAAGGCGCTCTTGGCCCAGGCCGGCGGGTCGAGCAGCACC
AGGTCGTATTGACGCTGGTCCAGACGCGGATAACTCGGCAGCTTCTGGCC
GCGACGCTGGCTGATGGGCAGGCCGGCCAGTTGGCGGATTGCCGGGAAGT
AGTCGGACTGGACGAATTCCATCGTCGGCAATTGCGGATTCAGTTGCCCG
TTTTCGCGACCGACCGCCAGGTTGCCCTCGGCAAAGTCCAGGTTGCACAC
CTCACGGGCACCACCGGCGGCGGCGCTCAGGCCTACGCCGCAGGTGTAGG
CGAACAGGTTCAACACGCTTTTGCCGGCACTGTGTGCCTTGACCCAGCCG
CGGGTGTTGCGCAAGTCCAGGAACAGCAACGGGTCTTGCCCGGCA
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