EY703218

Overview
NameEY703218
Unique NameEY703218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:31..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 8.569e-111
Identity = 181/226 (80.09%), Postives = 195/226 (86.28%), Query Frame = 1
Query:   67 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732
            A TS AVLNGL SSF+ GG KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAG   +GVY+PDTEKL+R +VAEI
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEI 227          

HSP 2 Score: 50.0618 bits (118), Expect = 8.569e-111
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 3
Query:  735 HAKLAMVAMLIFYFEAGPSKTPTGALGL 818
            HA+LAM+AMLIFYFEAG  KTP GALGL
Sbjct:  229 HARLAMLAMLIFYFEAGQGKTPLGALGL 256          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 2.722e-109
Identity = 177/227 (77.97%), Postives = 196/227 (86.34%), Query Frame = 1
Query:   61 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732
            M   ++ AVLNGL SSF+ GGKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAG   +GVY+PDTEKL+R ++AEI
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEI 227          

HSP 2 Score: 48.9062 bits (115), Expect = 2.722e-109
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 3
Query:  735 HAKLAMVAMLIFYFEAGPSKTPTGALGL 818
            H++LAM+AMLIFYFEAG  KTP GALGL
Sbjct:  229 HSRLAMLAMLIFYFEAGQGKTPLGALGL 256          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.236e-106
Identity = 174/232 (75.00%), Postives = 197/232 (84.91%), Query Frame = 1
Query:   61 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732
            MAAATS  A++NG  S F++GGKKS Q+LL   ++V      T            PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAG   +GVY PDT+KL+R ++AEI
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEI 232          

HSP 2 Score: 50.0618 bits (118), Expect = 1.236e-106
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 3
Query:  735 HAKLAMVAMLIFYFEAGPSKTPTGALGL 818
            HA+LAM+AMLIFYFEAG  KTP GALGL
Sbjct:  234 HARLAMLAMLIFYFEAGQGKTPLGALGL 261          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 73/220 (33.18%), Postives = 104/220 (47.27%), Query Frame = 1
Query:   13 ASGPFCSYRSQVEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 654
            AS    S  + V   S ++  +G+++    +SF+ GGK+ +         +           P +  W P          PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   P   + +   P ++          + GYPGG +FDPL
Sbjct:    2 ASACASSTIAAVAFSSPSSQKNGSIVGATKASFL-GGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL 205          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.568e-24
Identity = 70/220 (31.82%), Postives = 103/220 (46.82%), Query Frame = 1
Query:   13 ASGPFCSYRSQVEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 654
            AS    S  + V   S ++  +G+++    +SF+ GG++ +     T               P +  W P          P WLDGSLPGD+GFDPLGL  DP  L+W ++AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   P   + +   P ++          + GYPGG +FDPL
Sbjct:    2 ASACASSTIAAVAFSSPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL 205          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20
Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  205 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 663
            K  W+P       L +P +L GSLPGD GFDPLGL +DP  L+W+ +AEL++GRWAM  V G+ + + ++ I       W+ AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F+PL  A
Sbjct:   53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFNPLNFA 195          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20
Identity = 59/159 (37.11%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  205 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 663
            K  W+P       L +P++L GSL GD GFDPLGL +DP  LKW+ +AEL++GRWAM  V G+ + + ++ I       W++AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F+PL  A
Sbjct:   54 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFA 196          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.909e-19
Identity = 83/283 (29.33%), Postives = 114/283 (40.28%), Query Frame = 1
Query:   67 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKS----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732
            AATS A      +S I G + +  +  G+ R T           P K +          W P        I+P+WLDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R     N E  S                   ++ YPGGKFFDPL LA          D EK  + Q+AEI
Sbjct:    2 AATSAAAA---AASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPGGKFFDPLGLAA---------DPEKTAQLQLAEI 243          

HSP 2 Score: 21.557 bits (44), Expect = 3.909e-19
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  735 HAKLAMVAMLIFYFEA 782
            HA+LAMVA L F  +A
Sbjct:  245 HARLAMVAFLGFAVQA 260          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.155e-16
Identity = 69/224 (30.80%), Postives = 94/224 (41.96%), Query Frame = 1
Query:  214 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732
            W P  K      +PE+LDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R     N E  S                   ++ YPGGKFFDPL LA          D  K  + Q+AEI
Sbjct:   55 WFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPGGKFFDPLGLAS---------DPVKKAQLQLAEI 240          
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.854e-15
Identity = 52/156 (33.33%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  205 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG---ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 663
            K SW+P ++      +P +LDGSL GD GFDPL L +DP  L+W+ +A++++GRWAM  V G+ + +  +      A      PG    F+  S      +   +VE +RW D  NP S + +         ++++    E GYP G+ F+PL  A
Sbjct:   33 KGSWLPGLQ------SPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYP-GRVFNPLNFA 175          
The following BLAST results are available for this feature:
BLAST of EY703218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CB4A_SOLLC8.569e-11180.09Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.722e-10977.97Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL1.236e-10675.00Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY5.174e-2533.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.568e-2431.82Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA2.938e-2037.11Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH2.938e-2037.11Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4A_ARATH3.909e-1929.33Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.155e-1630.80Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB120_HORVU4.854e-1533.33Chlorophyll a-b binding protein 1B-20, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-017-B09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703218 ID=EY703218; Name=EY703218; organism=Citrus sinensis; type=EST; length=883bp
TTGTCGACCCACGCGTCCGGCCCATTCTGCAGCTACAGAAGTCAAGTAGA
GATCATATCTATGGCGGCTGCAACATCCGGGGCTGTGTTAAACGGATTGG
GTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCTGGC
ACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCTTCC
ACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTGGTGGCAACCTCATTA
ATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGACTACGGATTCGACCCA
CTTGGGCTTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGA
ACTGATCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCG
GACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGA
GCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCT
TATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAAT
CTCAATCAGTTGAATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTT
GCCAATGCGACTGGTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCC
CTTATGTTTGGCTGGAAAACATTAGGATGGTGTCTACATTCCTGACACTG
AGAAGCTTGACAGGGCTCAAGTTGCTGAGATTAACATGCTAAGCTTGCTA
TGGTGGCCATGTTGATTTTCTACTTTGAAGCTGGNCCAAGCAAGACGCCA
ACTGGGGCTCTNGGTTTGTGAAACATGCTTATGTAAATAACCACCTGATG
GGGTTAAGCGTAATCATCCGATGTTATGAGTCC
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