EY703218
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 372.859 bits (956), Expect = 8.569e-111 Identity = 181/226 (80.09%), Postives = 195/226 (86.28%), Query Frame = 1 Query: 67 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732 A TS AVLNGL SSF+ GG KSQALLA RV L KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAG +GVY+PDTEKL+R +VAEI Sbjct: 2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEI 227 HSP 2 Score: 50.0618 bits (118), Expect = 8.569e-111 Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 3 Query: 735 HAKLAMVAMLIFYFEAGPSKTPTGALGL 818 HA+LAM+AMLIFYFEAG KTP GALGL Sbjct: 229 HARLAMLAMLIFYFEAGQGKTPLGALGL 256
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 369.007 bits (946), Expect = 2.722e-109 Identity = 177/227 (77.97%), Postives = 196/227 (86.34%), Query Frame = 1 Query: 61 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732 M ++ AVLNGL SSF+ GGKK+QALL T RVT + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAG +GVY+PDTEKL+R ++AEI Sbjct: 1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEI 227 HSP 2 Score: 48.9062 bits (115), Expect = 2.722e-109 Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 3 Query: 735 HAKLAMVAMLIFYFEAGPSKTPTGALGL 818 H++LAM+AMLIFYFEAG KTP GALGL Sbjct: 229 HSRLAMLAMLIFYFEAGQGKTPLGALGL 256
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 358.992 bits (920), Expect = 1.236e-106 Identity = 174/232 (75.00%), Postives = 197/232 (84.91%), Query Frame = 1 Query: 61 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732 MAAATS A++NG S F++GGKKS Q+LL ++V T PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAG +GVY PDT+KL+R ++AEI Sbjct: 1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEI 232 HSP 2 Score: 50.0618 bits (118), Expect = 1.236e-106 Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 3 Query: 735 HAKLAMVAMLIFYFEAGPSKTPTGALGL 818 HA+LAM+AMLIFYFEAG KTP GALGL Sbjct: 234 HARLAMLAMLIFYFEAGQGKTPLGALGL 261
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25 Identity = 73/220 (33.18%), Postives = 104/220 (47.27%), Query Frame = 1 Query: 13 ASGPFCSYRSQVEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 654 AS S + V S ++ +G+++ +SF+ GGK+ + + P + W P PEWLDGSLPGD+GFDPLGLG DP LKW +AEL+H RWAM GIF+ + + I W+ AG +L +L+L+GW E +RW D P + + P ++ + GYPGG +FDPL Sbjct: 2 ASACASSTIAAVAFSSPSSQKNGSIVGATKASFL-GGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL 205
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.568e-24 Identity = 70/220 (31.82%), Postives = 103/220 (46.82%), Query Frame = 1 Query: 13 ASGPFCSYRSQVEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 654 AS S + V S ++ +G+++ +SF+ GG++ + T P + W P P WLDGSLPGD+GFDPLGL DP L+W ++AEL+H RWAM GIF+ + + I W+ AG +L +L+L+GW E +RW D P + + P ++ + GYPGG +FDPL Sbjct: 2 ASACASSTIAAVAFSSPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL 205
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20 Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 1 Query: 205 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 663 K W+P L +P +L GSLPGD GFDPLGL +DP L+W+ +AEL++GRWAM V G+ + + ++ I W+ AG + S +L + +L +VE +RW D NP S + + + ++ GE GYPGG F+PL A Sbjct: 53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFNPLNFA 195
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20 Identity = 59/159 (37.11%), Postives = 87/159 (54.72%), Query Frame = 1 Query: 205 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 663 K W+P L +P++L GSL GD GFDPLGL +DP LKW+ +AEL++GRWAM V G+ + + ++ I W++AG + S +L + +L +VE +RW D NP S + + + ++ GE GYPGG F+PL A Sbjct: 54 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFA 196
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.909e-19 Identity = 83/283 (29.33%), Postives = 114/283 (40.28%), Query Frame = 1 Query: 67 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKS----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732 AATS A +S I G + + + G+ R T P K + W P I+P+WLDGSL GDYGFDP GLGK +L++ +RE ELIHGRWAM A +G + +G+ W +AG + G PFS +L+ ++L++G++E +R N E S ++ YPGGKFFDPL LA D EK + Q+AEI Sbjct: 2 AATSAAAA---AASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPGGKFFDPLGLAA---------DPEKTAQLQLAEI 243 HSP 2 Score: 21.557 bits (44), Expect = 3.909e-19 Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3 Query: 735 HAKLAMVAMLIFYFEA 782 HA+LAMVA L F +A Sbjct: 245 HARLAMVAFLGFAVQA 260
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.155e-16 Identity = 69/224 (30.80%), Postives = 94/224 (41.96%), Query Frame = 1 Query: 214 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGKH*DGVYIPDTEKLDRAQVAEI 732 W P K +PE+LDGSL GDYGFDP GLGK +L++ +RE ELIHGRWAM A +G + +G+ W +AG + G PFS +L+ ++L++G++E +R N E S ++ YPGGKFFDPL LA D K + Q+AEI Sbjct: 55 WFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPGGKFFDPLGLAS---------DPVKKAQLQLAEI 240
BLAST of EY703218 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.854e-15 Identity = 52/156 (33.33%), Postives = 81/156 (51.92%), Query Frame = 1 Query: 205 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG---ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 663 K SW+P ++ +P +LDGSL GD GFDPL L +DP L+W+ +A++++GRWAM V G+ + + + A PG F+ S + +VE +RW D NP S + + ++++ E GYP G+ F+PL A Sbjct: 33 KGSWLPGLQ------SPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYP-GRVFNPLNFA 175 The following BLAST results are available for this feature:
BLAST of EY703218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >EY703218 ID=EY703218; Name=EY703218; organism=Citrus sinensis; type=EST; length=883bpback to top |