EY703192

Overview
NameEY703192
Unique NameEY703192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY703192_ssr326 microsatellite EY703192_ssr326:326..337. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10043 contig Csv1_Contig10043:1..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY703192 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.521e-49
Identity = 89/126 (70.63%), Postives = 111/126 (88.10%), Query Frame = 1
Query:  379 SPYQWLRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNS--TRISSVSEEMLVRKLFFDMFPFLKVAFVLTIQLLLXXMKGK 750
            SP+  L++LK EERGLYLIHLLL+CANHVA+GSL+NAN AL+Q+S LASPDGDTMQRIAAYFTEALA RILKSWPGL+KALN+  TR ++VSEE+ VR+LFF+MFP LKV+++LT + +L  M+G+
Sbjct:   37 SPFHCLKDLKPEERGLYLIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFPILKVSYLLTNRAILEAMEGE 162          

HSP 2 Score: 38.5058 bits (88), Expect = 1.521e-49
Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 2
Query:  749 KXXHVIDLNAAEPAQWIALISALSTSLKG 835
            K  HVIDL+A+EPAQW+AL+ A ++  +G
Sbjct:  163 KMVHVIDLDASEPAQWLALLQAFNSRPEG 191          
BLAST of EY703192 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.153e-12
Identity = 40/104 (38.46%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  394 LRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKA--LNSTRISSVSEEMLVRKLFFDMFPFLK 699
            L + K +E GL+L+ LLL CA  VA  +L+ AN  L Q+S+L++P G + QR+AAYF+EA++ R++ S  G++ +  LN+  +S   +     ++F  + PF+K
Sbjct:  405 LEQQKKDEEGLHLLTLLLQCAEAVAADNLDEANRMLLQVSELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYASAPLNALPLSLNQKMASAFQVFNGISPFVK 508          

HSP 2 Score: 21.557 bits (44), Expect = 1.153e-12
Identity = 8/22 (36.36%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  758 HVIDLNAAEPAQWIALISALST 823
            H+IDL+  +  QW  L   L++
Sbjct:  529 HIIDLDIMQGLQWPGLFHILAS 550          
BLAST of EY703192 vs. ExPASy Swiss-Prot
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  394 LRELKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNS 627
            ++  K +E GL+L+ LLL CA  V+  +LE AN  L +ISQL++P G + QR+AAYF+EA++ R+L S  G++ AL S
Sbjct:  278 IKRQKQDEEGLHLLTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPS 355          
BLAST of EY703192 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.567e-11
Identity = 38/99 (38.38%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  406 KSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEML-VRKLFFDMFPFLK 699
            K +E GL+L+ LLL CA  V+  +LE AN  L +ISQL++P G + QR+AAYF+EA++ R++ S  G++  L  +  +  ++++    ++F  + PF+K
Sbjct:  439 KKDEEGLHLLTLLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPVSSHTPHNQKVASAFQVFNGISPFVK 537          

HSP 2 Score: 21.9422 bits (45), Expect = 1.567e-11
Identity = 9/29 (31.03%), Postives = 15/29 (51.72%), Query Frame = 2
Query:  758 HVIDLNAAEPAQWIALISALSTSLKGTSF 844
            H+IDL+  +  QW  L   L++   G  +
Sbjct:  558 HIIDLDIMQGLQWPGLFHILASRPGGPPY 586          
BLAST of EY703192 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.851e-11
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  403 LKSEERGLYLIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTIQLLL 732
            L S+E G+ L+H LL+CA  V   +L+ A+  +  +  LAS     M+++A YF E LA+RI + +P      +   +SS S+ + +   F++  P+LK A     Q +L
Sbjct:  143 LDSQETGVRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYRIYP-----RDDVALSSFSDTLQIH--FYESCPYLKFAHFTANQAIL 245          

HSP 2 Score: 25.7942 bits (55), Expect = 5.851e-11
Identity = 13/26 (50.00%), Postives = 14/26 (53.85%), Query Frame = 2
Query:  758 HVIDLNAAEPAQWIALISALSTSLKG 835
            HVIDL      QW ALI AL+    G
Sbjct:  255 HVIDLGLNHGLQWPALIQALALRPNG 280          
The following BLAST results are available for this feature:
BLAST of EY703192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SCL3_ARATH1.521e-4970.63Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
SCR_IPONI1.153e-1238.46Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]
SCR_ARATH2.730e-1247.44Protein SCARECROW OS=Arabidopsis thaliana GN=SCR P... [more]
SCR_PEA1.567e-1138.38Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]
RGL1_ARATH5.851e-1132.73DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-016-H06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703192 ID=EY703192; Name=EY703192; organism=Citrus sinensis; type=EST; length=845bp
CCACGCGTCCGGTTTCTGTTTCAGAGGAGCTTTCTTTACCTTTCTTGTGA
TATTCTTTGTGGGTTTTTGATGATTTACAGAACACACTAAGGAATTTTCA
CCTCTCAATTTGTTTGGTTAGTTCTGGTTTTTCTTTCTTTTATTTTTTTT
TGGTTTTGCACTGTTTCATACTGTTGTTTTCTTGTGATTTTGATTTTAAC
TTGCTTAAATTTTCGTTGATTCTTGTGAATGCTACATGCACACTTAGGCG
AGTTCTGATTCTTGACTATTATTTTTGCTTATTTAATGGTACCAATGTTT
CAAGATGATGGATCTTCGTCTGTAACATCATCATCATCTCCTCTTCAATT
CTTCTCAACGATGTCTCCTAGTTTAGGCTCCCCTTATCAGTGGCTTAGAG
AGCTTAAATCTGAGGAAAGGGGCTTGTATTTGATTCATCTATTGCTTAGT
TGTGCAAATCATGTAGCAAATGGTAGTCTTGAAAATGCTAATCTTGCTCT
GGACCAAATCTCGCAACTCGCCTCTCCTGATGGTGACACCATGCAACGCA
TTGCTGCCTACTTCACCGAGGCACTTGCTCAAAGAATCCTCAAATCTTGG
CCTGGCCTTCACAAGGCCCTCAATTCCACTAGAATTAGTTCAGTTTCTGA
AGAAATGCTTGTTCGGAAACTATTTTTTGATATGTTCCCGTTCTTGAAAG
TGGCTTTTGTGCTCACAATTCAGCTATTATTGNAANGCATGAAAGGGAAA
ANGTGNTCATGTGATTGATCTAAATGCAGCTGAGCCTGCACAGTGGATTG
CACTCATTTCAGCTTTGAGTACAAGCCTGAAGGGCACCTCATTTG
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