EY703166
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 5.029e-94 Identity = 145/179 (81.01%), Postives = 157/179 (87.71%), Query Frame = 3 Query: 27 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF 560 MASNTLMSCGI PS LSS+KSKF A+ + A N S+++MSADWMPG+PRP YLDGSAPGDFGFD L LGEVP NLERYKESELIHCRWAMLAVPGI+VPEALGLGNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+ Sbjct: 1 MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGY 178 HSP 2 Score: 67.3958 bits (163), Expect = 5.029e-94 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 559 SPRPPEVRGIQSQGDKKWAFGIVGICGFLRATSAYPGTGPLENXXTHLADPWHNTLGDVLSPEGLCP 759 S P + ++ + K ++ I GF SAY GTGPLEN THLADPWHN +GDV+ P+G+ P Sbjct: 179 SKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPKGIFP 245
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 1.157e-67 Identity = 120/177 (67.80%), Postives = 140/177 (79.10%), Query Frame = 3 Query: 30 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF 560 +S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA+P GQATYLGNPVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGF Sbjct: 3 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGF 177
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.836e-29 Identity = 64/180 (35.56%), Postives = 92/180 (51.11%), Query Frame = 3 Query: 84 LSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGF 560 L S K V+ P + ++ + + A +W+PG P YL GS PGD GFDPL L E PENL + ++EL++ RWAML V G+L+PE + +W A G+ Y + + T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL F Sbjct: 23 LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEY------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNF 194 HSP 2 Score: 38.5058 bits (88), Expect = 1.836e-29 Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 2 Query: 584 EYKVKEIKNGRLALLAFVGFCVQH 655 E K KEI NGRLA+LAF+GF +QH Sbjct: 199 EAKEKEIANGRLAMLAFLGFIIQH 222 HSP 3 Score: 35.4242 bits (80), Expect = 1.836e-29 Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 1 Query: 667 GTGPLENXXTHLADPWHNTLGDVL 738 G GP +N H++DPWHNT+ L Sbjct: 226 GKGPFDNLLQHISDPWHNTIVQTL 249
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.841e-27 Identity = 78/232 (33.62%), Postives = 107/232 (46.12%), Query Frame = 3 Query: 15 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAV----SLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------------------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLG 557 S+ A++++M +A P S FTAV AA ++K ++ D W PG P +LDGS GD+GFDP LG+ E L+ R++E ELIH RWAMLA G L E L W A + V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG FDPLG Sbjct: 5 SAAAAAASSIMGTRVAPGIHPG------SGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLG 227 HSP 2 Score: 45.0542 bits (105), Expect = 1.841e-27 Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 2 Query: 542 FRPLGLLQDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 652 F PLGL DP+K + ++ EIK+ RLA++AF+GF VQ Sbjct: 223 FDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQ 259
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.393e-27 Identity = 51/130 (39.23%), Postives = 67/130 (51.54%), Query Frame = 3 Query: 192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNWVQAQEW-----AAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR-SMEKDPEKKKYPGGAFDPLG 557 P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML G ++PEAL N W + G Y G +P L +V E + + E+ R + D E K +PGG FDPLG Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLG 210 HSP 2 Score: 47.3654 bits (111), Expect = 4.393e-27 Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 2 Query: 542 FRPLGLLQDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 652 F PLGL +DP++ KVKEIKNGRLA+ A +GF +Q Sbjct: 206 FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQ 242 HSP 3 Score: 29.261 bits (64), Expect = 4.393e-27 Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1 Query: 667 GTGPLENXXTHLADPWHNTLGDVLS 741 G GP+EN HL+DP+ N L V++ Sbjct: 247 GEGPVENLAKHLSDPFGNNLLTVIA 271
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 4.403e-27 Identity = 56/139 (40.29%), Postives = 69/139 (49.64%), Query Frame = 3 Query: 180 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLG 557 GEP P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L G W +A GG YLGNP V ++ I + + + VE R + P E YPGG+FDPLG Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLG 199 HSP 2 Score: 51.6026 bits (122), Expect = 4.403e-27 Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 2 Query: 530 PRWCFRPLGLLQDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 652 P F PLGL DP+ F E KVKEIKNGRLA+ + GF VQ Sbjct: 191 PGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231 HSP 3 Score: 28.8758 bits (63), Expect = 4.403e-27 Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 667 GTGPLENXXTHLADPWHN 720 G GPLEN HLADP +N Sbjct: 236 GKGPLENLADHLADPVNN 253
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.883e-27 Identity = 75/224 (33.48%), Postives = 100/224 (44.64%), Query Frame = 3 Query: 33 SNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------------------------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLG 557 S + I T S +SS+ S+F A+ K A + W PG P YLDGS GD+GFDP LG+ E L+R++E ELIH RWAMLA G + E L W A + V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG FDPLG Sbjct: 5 STAAAASSIMGTRVVSDISSNSSRFTARFGF-GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLG 224 HSP 2 Score: 41.9726 bits (97), Expect = 6.883e-27 Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 2 Query: 542 FRPLGLLQDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 652 F PLGL DP K + ++ EIK+ RLA++ F+GF VQ Sbjct: 220 FDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 256
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.541e-26 Identity = 71/212 (33.49%), Postives = 90/212 (42.45%), Query Frame = 3 Query: 42 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANA----------TSKYAMSADWMP--------------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLG 557 + SCGI + AF +SS K + + A + T K SA P GEP P YL G PGD+G+D L PEN + +E E+IHCRWAML G + PE L G W +A GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSFDPLG 207 HSP 2 Score: 52.7582 bits (125), Expect = 3.541e-26 Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 2 Query: 530 PRWCFRPLGLLQDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 652 P F PLGL +DP+ F E KVKEIKNGRLA+ + GF VQ Sbjct: 199 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 239 HSP 3 Score: 28.1054 bits (61), Expect = 3.541e-26 Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 667 GTGPLENXXTHLADPWHN 720 G GP+EN HLADP +N Sbjct: 244 GKGPIENLADHLADPVNN 261
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.602e-26 Identity = 65/199 (32.66%), Postives = 86/199 (43.22%), Query Frame = 3 Query: 30 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADW-----------MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKKYPGGAFDPLG 557 AS T +S A A SSS+ V++ AN + + W GE P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L G W +A GG YLGNP V ++ I + + + VE R + + YPGG+FDPLG Sbjct: 3 ASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGES-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLG 199 HSP 2 Score: 52.7582 bits (125), Expect = 4.602e-26 Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 2 Query: 530 PRWCFRPLGLLQDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 652 P F PLGL +DP+ F E KVKEIKNGRLA+ + GF VQ Sbjct: 191 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231 HSP 3 Score: 28.8758 bits (63), Expect = 4.602e-26 Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 667 GTGPLENXXTHLADPWHN 720 G GPLEN HLADP +N Sbjct: 236 GKGPLENLADHLADPVNN 253
BLAST of EY703166 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.691e-26 Identity = 65/187 (34.76%), Postives = 94/187 (50.27%), Query Frame = 3 Query: 66 TAFPSVLSSSKSKF-----FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGF 560 T+ P L+ S + FT++ A ++ A +W+PG P YL GS GD GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE + EW G+ Y + + T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL F Sbjct: 17 TSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNF 195 HSP 2 Score: 38.5058 bits (88), Expect = 5.691e-26 Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 1 Query: 589 QSQGDKKWAFGIVGICGFLRATSAY--PGTGPLENXXTHLADPWHNTL 726 Q +K+ A G + + FL + G GP EN HL+DPWHNT+ Sbjct: 199 QEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246 The following BLAST results are available for this feature:
BLAST of EY703166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >EY703166 ID=EY703166; Name=EY703166; organism=Citrus sinensis; type=EST; length=913bpback to top |