EY703160

Overview
NameEY703160
Unique NameEY703160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13291 contig Csv1_Contig13291:190..730. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY703160 vs. ExPASy Swiss-Prot
Match: Y8111_DICDI (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   19 QGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 345
            QG G    ++Q Q+AQ   ++EA+ERRQ +L QIL+ +ARERL+RI +VKPEK+R +ED+I+R+AQ GQ+ E+V + +LISLLE                +R  +EDDD
Sbjct:   15 QGQGFDPEAQQRQEAQ---RQEANERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLE---QLSEKTKKTTITMKRRTIEDDD 117          
BLAST of EY703160 vs. ExPASy Swiss-Prot
Match: YF69_SCHPO (Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe GN=SPAC23C4.09c PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   13 AQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 345
            A   + S  +S Q Q+  +D      E RQ +LSQIL   AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE                 R V +D+D
Sbjct:   23 APSNIASGPSSNQQQQEVQD------EMRQNLLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINRRVQDDED 127          
BLAST of EY703160 vs. ExPASy Swiss-Prot
Match: PDCD5_PONAB (Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   61 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 345
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          
BLAST of EY703160 vs. ExPASy Swiss-Prot
Match: PDCD5_HUMAN (Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   61 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 345
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          
BLAST of EY703160 vs. ExPASy Swiss-Prot
Match: PDCD5_MOUSE (Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   61 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 345
            AQ++AK+   E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               RR+ +  D+D
Sbjct:   28 AQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          
BLAST of EY703160 vs. ExPASy Swiss-Prot
Match: PDCD5_BOVIN (Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   61 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 345
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          
BLAST of EY703160 vs. ExPASy Swiss-Prot
Match: Y708_METS3 (DNA-binding protein Msm_0708 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0708 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   28 GSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 267
            G  Q   Q Q  Q++A+R+ +E+++ +++QIL+TEAR RLA + L KPE    +E  +++SAQ G +  KV++E+L  LL
Sbjct:   24 GQMQQQAQQQMQQQEAQRQFEEQKKALIAQILTTEARSRLANLKLTKPELVNQIEIQLIQSAQAGSLRGKVTDEQLKVLL 103          
BLAST of EY703160 vs. ExPASy Swiss-Prot
Match: Y1087_PYRFU (DNA-binding protein PF1087 OS=Pyrococcus furiosus GN=PF1087 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    7 VRAQQGVGSQQNSEQHQKAQEDAKREA---DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 267
            +R ++ +  Q+   + QKAQE+A+R+    + + Q +L +IL+ EARERLAR+ LVKPE AR VE I+++  Q GQI EK+ + ++  +L
Sbjct:    8 IRRRKLMELQKKYLEQQKAQEEAERQQALIEAQIQAILRRILTPEARERLARVKLVKPELARQVELILVQLYQAGQITEKIDDAKMKKIL 97          
The following BLAST results are available for this feature:
BLAST of EY703160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y8111_DICDI2.470e-1846.79DNA-binding protein DDB_G0278111 OS=Dictyostelium ... [more]
YF69_SCHPO3.455e-1239.64Uncharacterized protein C23C4.09c OS=Schizosacchar... [more]
PDCD5_PONAB4.512e-1238.95Programmed cell death protein 5 OS=Pongo abelii GN... [more]
PDCD5_HUMAN4.512e-1238.95Programmed cell death protein 5 OS=Homo sapiens GN... [more]
PDCD5_MOUSE7.697e-1238.95Programmed cell death protein 5 OS=Mus musculus GN... [more]
PDCD5_BOVIN1.005e-1138.95Programmed cell death protein 5 OS=Bos taurus GN=P... [more]
Y708_METS34.989e-1141.25DNA-binding protein Msm_0708 OS=Methanobrevibacter... [more]
Y1087_PYRFU6.516e-1142.22DNA-binding protein PF1087 OS=Pyrococcus furiosus ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-016-E09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703160 ID=EY703160; Name=EY703160; organism=Citrus sinensis; type=EST; length=541bp
CCACGCGTCCGGGCCCAACAAGGCGTGGGGAGTCAACAAAATTCTGAGCA
GCATCAGAAAGCTCAGGAAGATGCCAAGAGGGAGGCAGATGAACGGAGAC
AAATGATGCTTAGCCAGATTTTGTCAACCGAAGCACGTGAAAGACTTGCT
CGAATTGCTTTGGTGAAACCCGAGAAGGCTAGAGGTGTTGAGGACATTAT
ATTGAGATCTGCCCAAATGGGTCAGATAGTTGAGAAGGTTTCTGAAGAGA
GGCTCATATCATTGCTGGAACAGATTAACACCCAAACCACCAAACAGACC
AAAGTCACAATCCAAAGGCGCCGGAGTGTTTTGGAAGATGATGATTAACC
TTGTGTAATTTCTGGTCATCATGGTGTGATACGCAATGCTATTCATGGTT
ATTGAAATTATGATGTGCTTTTTCATTGTTATTGACGGTTCACCGTTTTG
ACATTATCTACAGGGTTTGTGTTATTTATACTCAAATCTTTTCTATAGTT
ATGTATCGGTTATTTTACTAGTAAAAAAAAAAAAAAAAAAA
back to top