EY720458

Overview
NameEY720458
Unique NameEY720458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10631 contig Csv1_Contig10631:31..888. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY720458 vs. ExPASy Swiss-Prot
Match: CYCH_PSEAE (Cytochrome c-type biogenesis protein cycH OS=Pseudomonas aeruginosa GN=cycH PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.334e-59
Identity = 127/248 (51.21%), Postives = 165/248 (66.53%), Query Frame = -1
Query:  128 LGWPYMAQDLSADRPKVLERTVNWPVAARSCSGSGPSPSTLR*---QTVSPKXQALTDEALKLDPKEVTSLGLXGIAAFEGQRYQEAIDYWNRLLAQLPPEDNSRVALQGGIDRAAEKLRESGGS----VAPVKAQKQMQVRVDLAPDVKAKASPTDSVFIFARAVKGPPAPLAAKRVTVADLPITVELGDADAMMPQLKLSNFPEVQLVARISRAGVPTAGEWIGRSQPLASSTTALQQLTIDSPDK 850
            LG  YM Q+  AD  +  ER     ++ R     G     L     + ++ + +AL DEALK DP EVT+LGL GIAAFE QRY +AI +W RL++ LP ED +R A+QGGI RA E++ E+G +     AP  A   + V+VD++  VK +    DSVF+FARAV GPP PLA KR+TVADLP  V L DADAMMPQLKLS FP+V+LVAR+SRAG   +GEWIGR +PL+++ ++ Q LTID PD+
Sbjct:  156 LGRTYMTQERGADAARAFERAAE--LSGRQPEVLGQWAQALYFSGGKKMTAQIKALADEALKGDPAEVTTLGLLGIAAFEEQRYADAIGFWERLVSVLPNEDPARSAIQGGIQRARERMTEAGQTPPAPAAPAAAGVTLTVKVDISDAVKGQVKADDSVFVFARAVGGPPMPLAVKRLTVADLPAEVSLSDADAMMPQLKLSGFPQVELVARVSRAGNAISGEWIGRGKPLSTAQSSAQALTIDGPDQ 401          
BLAST of EY720458 vs. ExPASy Swiss-Prot
Match: CYCH_PSEFL (Cytochrome c-type biogenesis protein cycH OS=Pseudomonas fluorescens GN=cycH PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.618e-44
Identity = 103/153 (67.32%), Postives = 110/153 (71.90%), Query Frame = -1
Query:  395 LGWPYMAQDLSADRPKVLERTVNWPVAARSCSGSGPSPSTLR*QTV-SPKXQALTDEALKLDPKEVTSLGLXGIAAFEGQRYQEAIDYWNRLLAQLPPEDNSRVALQGGIDRAAEKLRESGGSVAPVKAQKQMQVRVDLAPDVKAKASPTDSV 850
            LG  YMAQD SAD  KV ERTV          G              SPK QALTDEALKLDPKEVTSLGL GIAAFEGQRYQEAIDYWNRLLAQLPP+DNSRVALQGGIDRAAEKL+ESGG+VA    +  M VRVDL+ + KAK  P+DSV
Sbjct:  156 LGRAYMAQDRSADAAKVFERTVALAGRQPELLGQWAQAQYFADNKQWSPKVQALTDEALKLDPKEVTSLGLLGIAAFEGQRYQEAIDYWNRLLAQLPPQDNSRVALQGGIDRAAEKLKESGGTVA---HKTVMTVRVDLSAEAKAKTLPSDSV 305          
The following BLAST results are available for this feature:
BLAST of EY720458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CYCH_PSEAE2.334e-5951.21Cytochrome c-type biogenesis protein cycH OS=Pseud... [more]
CYCH_PSEFL3.618e-4467.32Cytochrome c-type biogenesis protein cycH OS=Pseud... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-G04-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720458 ID=EY720458; Name=EY720458; organism=Citrus sinensis; type=EST; length=856bp
GCCCTGTCGGTGGAATGGTCGGCCCGGTAGGCGACGGAGGCCGGTGGACC
GCACAAGCACTCAACCCCAATACCAGGCTGAGCAGGGTGATACGTGCGAT
AGCGGTCATGGGCATTTCCTCGAATTATTTATCCGGACTGTCGATGGTCA
GCTGCTGCAGCGCAGTGGTGCTGCTGGCCAGGGGTTGGCTGCGGCCGATC
CACTCGCCAGCTGTCGGAACACCTGCCCGGGATATGCGCGCAACCAGTTG
GACTTCGGGAAAGTTGGACAGTTTCAACTGCGGCATCATCGCGTCGGCAT
CGCCCAGTTCGACGGTGATCGGCAGGTCGGCCACGGTCACGCGCTTGGCG
GCCAATGGCGCTGGCGGGCCTTTGACGGCACGGGCGAAGATGAACACGCT
GTCGGTCGGCGAGGCCTTGGCCTTCACATCCGGCGCCAGGTCTACGCGCA
CTTGCATCTGCTTTTGTGCCTTCACGGGCGCCACGCTACCGCCACTCTCT
CTGAGCTTCTCGGCAGCCCGGTCAATCCCGCCTTGCAGTGCGACACGGGA
GTTGTCTTCCGGCGGCAGTTGCGCCAGCAGGCGGTTCCAGTAGTCGATCG
CTTCCTGGTAACGCTGGCCTTCAAAGGCGGCGATGCCCANCAGGCCGAGG
CTGGTGACTTCTTTCGGATCGAGTTTCAGTGCTTCGTCGGTCAGGGCCTG
NNACTTGGGCGACACTGTTTGTTATCGCAAAGTACTGGGGCTGGGCCCAC
TGCCCGAACAGCTCCGGGCTGCGACCGGCCAATTCACGGTGCGCTCCAAA
ACTTTGGGCCGATCGGCGGAAAGGTCCTGGGCCATGTAGGGCCAACCGAG
GGAATT
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