EY650389

Overview
NameEY650389
Unique NameEY650389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650389 vs. ExPASy Swiss-Prot
Match: PFBS_ARATH (Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana GN=HY2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 7.988e-61
Identity = 84/141 (59.57%), Postives = 109/141 (77.30%), Query Frame = 2
Query:   95 RRRKAPVLLQVSAVSYQKFIDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLKYTK 517
            RRRK   LL+VSAVSY++F + A+ ET++  VL PS LQEKY+++  +DGKTELQM +F++ KIRLLRSM+I+NE MQV DFA F +PE+D PIFCANFFT+ + NIVVLDLNPLH +    DY+DKYY  +M +  KY +
Sbjct:   36 RRRKKRFLLRVSAVSYKEFAESALEETRKRIVLEPSHLQEKYSSMTGLDGKTELQMLAFKSSKIRLLRSMAIENETMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIVVLDLNPLHQLTDQTDYQDKYYNKIMSIYHKYAE 176          

HSP 2 Score: 80.8777 bits (198), Expect = 7.988e-61
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  508 VYQDFMQLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYX*AW 666
            +Y  + +  PWGG+LT ESIKFFSP+V+WT+F+SS++KH AL+SAF+EY  AW
Sbjct:  170 IYHKYAETFPWGGKLTGESIKFFSPLVMWTRFSSSKEKHKALFSAFLEYYQAW 222          
BLAST of EY650389 vs. ExPASy Swiss-Prot
Match: PEBB_TRIEI (Phycoerythrobilin:ferredoxin oxidoreductase OS=Trichodesmium erythraeum (strain IMS101) GN=pebB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.006e-17
Identity = 41/133 (30.83%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  140 YQKFIDFAVNETKRHAVLAPSPLQEKYNTLVAMDGK----TELQMSSFQ--APKIRLLRSMSIQN-EVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLKYTK 517
            YQ F+D+A+ + K    L P P+   +   VAM GK     E+Q +S+   +PK+R +R+  +Q    +QVL+F +FP   +D+P F A+  +    +++ LD+ PL     +  Y+ KY + +     K+ K
Sbjct:   11 YQPFLDYALTKLKEELELQPYPIPSGFEHKVAMTGKGKKQQEVQTTSYAHCSPKLRQIRAAHVQGGSALQVLNFVIFPHLNYDLPFFGADLVSLPGGHLIALDMQPLFR--DNLQYQKKYTEPIWETFQKHQK 141          

HSP 2 Score: 41.5874 bits (96), Expect = 2.006e-17
Identity = 17/54 (31.48%), Postives = 29/54 (53.70%), Query Frame = 1
Query:  505 KVYQDFMQLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYX*AW 666
            + +Q   + LPWGG    E+  FFSP  +WT+   ++     ++ AF +Y  A+
Sbjct:  134 ETFQKHQKYLPWGGDFPEEATPFFSPAFLWTRPQKTELVETRVFEAFKDYLQAY 187          
BLAST of EY650389 vs. ExPASy Swiss-Prot
Match: PEBB_NOSP7 (Phycoerythrobilin:ferredoxin oxidoreductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pebB PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.092e-14
Identity = 39/130 (30.00%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  140 YQKFIDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMS------SFQAPKIRLLRSMSIQN-EVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRD---YKDKYYKSLMPL 499
            YQ F+D+A+   +    L P P+   + +  A+ GK + Q        +FQ  K+R +R+  +Q    +QVL+F +FP   +D+P F A+  T    +++ LD+ PL      RD   Y+ KY + ++P+
Sbjct:   11 YQPFLDYAIAYMRSRLDLEPYPIPTGFESNSAVVGKGKNQEEVVTTSYAFQTAKLRQIRAAHVQGGNSLQVLNFVIFPHLNYDLPFFGADLVTLPGGHLIALDMQPL-----FRDDSAYQAKYTEPILPI 135          

HSP 2 Score: 36.5798 bits (83), Expect = 3.092e-14
Identity = 16/53 (30.19%), Postives = 27/53 (50.94%), Query Frame = 1
Query:  508 VYQDFMQLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYX*AW 666
            ++    Q L WGG    E+  FFSP  +WT+   +      +++AF +Y  A+
Sbjct:  135 IFHAHQQHLSWGGDFPEEAQPFFSPAFLWTRPQETAVVETQVFAAFKDYLKAY 187          
BLAST of EY650389 vs. ExPASy Swiss-Prot
Match: PEBB_GLOVI (Phycoerythrobilin:ferredoxin oxidoreductase OS=Gloeobacter violaceus GN=pebB PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 9.290e-13
Identity = 39/126 (30.95%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  140 YQKFIDFAVNETKRHAVLAPSPLQEKYNTLVAM-DGKTELQMSS-FQAPKIRLLRSMSIQNE-VMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRD---YKDKYYKSLMPL 499
            Y+ F++ A     R   LAP P+   +    A+  G+  +  S+ +Q+PK+R +R+  +Q    +QVL+F + P+ E+D+P F A+  T    +++ LD+ PL      RD   Y+ KY + ++PL
Sbjct:    4 YEPFLERAQQVLTRRLELAPYPIPVGFERKEALVRGEAVVTTSTAWQSPKLRQIRAAHVQGGGALQVLNFVISPRLEYDLPFFGADLVTLPGGHLIALDMQPL-----FRDDPAYQAKYTEPIVPL 124          

HSP 2 Score: 35.8094 bits (81), Expect = 9.290e-13
Identity = 15/45 (33.33%), Postives = 25/45 (55.56%), Query Frame = 1
Query:  532 LPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYX*AW 666
            L WGG    E+  FFSP  +WT+   +      +++AF++Y  A+
Sbjct:  132 LEWGGDFPEEARPFFSPAFLWTRPKETGTVETRVFAAFVDYLNAY 176          
The following BLAST results are available for this feature:
BLAST of EY650389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PFBS_ARATH7.988e-6159.57Phytochromobilin:ferredoxin oxidoreductase, chloro... [more]
PEBB_TRIEI2.006e-1730.83Phycoerythrobilin:ferredoxin oxidoreductase OS=Tri... [more]
PEBB_NOSP73.092e-1430.00Phycoerythrobilin:ferredoxin oxidoreductase OS=Nos... [more]
PEBB_GLOVI9.290e-1330.95Phycoerythrobilin:ferredoxin oxidoreductase OS=Glo... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-E02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650389 ID=EY650389; Name=EY650389; organism=Citrus sinensis; type=EST; length=959bp
CCACGCGTCCGAGCGATAGTCTTTCTCGTAACAGAGCAACGAAATAGATT
CTAACGGTGCTATTATTGTTTGTAAATTGCATGTTTACTGGAGAAGAAGA
AGGAAGGCTCCTGTACTTCTTCAAGTCTCTGCAGTTTCTTACCAGAAATT
CATAGACTTTGCTGTTAATGAAACCAAAAGGCATGCCGTTTTGGCCCCTT
CGCCTCTGCAGGAGAAATATAATACCTTGGTTGCAATGGATGGGAAAACA
GAGCTTCAAATGTCATCATTTCAAGCTCCCAAGATTAGACTCCTACGCAG
TATGAGCATACAAAATGAAGTAATGCAGGTTTTGGATTTTGCAGTCTTCC
CAAAACCAGAATTTGATGTACCCATCTTCTGTGCCAACTTTTTCACAGCA
GCGAGCACAAACATTGTCGTCTTGGACCTGAACCCCTTGCATGATGTCAT
TCATCACAGAGACTACAAGGATAAGTACTATAAAAGCTTAATGCCTCTTG
GTCTAAAGTATACCAAGATTTCATGCAGCTTTTACCCTGGGGAGGAAGAC
TTACAAGTGAGTCTATAAAATTTTTCTCGCCTATAGTGATATGGACTAAG
TTTACTTCAAGCCAAGACAAGCATGATGCTTTGTATTCTGCATTTATGGA
ATACTANTAGGCATGGCCTNAAGCTGATGGACCAAGCAGTTGAAGAGACA
GATGTATCTCAAATTATGGGCATTGGCGAACACAACATAAATTTTTACCT
TGAGAGCAAAAAAGGTATTTCCTTCCAAGCCGGCCCTTCCGGGAATGACA
CTTGCCCAACTGTAGCTGAGGTATTGGGGGCCTTCCATCATTAAAATTGG
GCCTACCATCTTTACAAAACCATCTTGTGCCATGCATAACCATGACCTGA
CCTTTAAAGGCCCTTCGGTTTTTGGGCGAAAGATTTGGAAAATATTTCCC
TAAATATGG
back to top