EY650361

Overview
NameEY650361
Unique NameEY650361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1_SOLLC (DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.358e-30
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 2
Query:  629 QGLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            Q LLATGGGHLVYLEIGDG+L EVK+A+L+Y+ISCLDINPIGENP Y  I AVGMWTDI  +I+SLPDLNLITKE LGG
Sbjct:  500 QVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCLDINPIGENPNYSNIAAVGMWTDISVRIYSLPDLNLITKEQLGG 578          

HSP 2 Score: 98.5969 bits (244), Expect = 4.842e-20
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    6 SQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVV 176
            SQ QTLFCHDA+YNQLVQVTS SVRLVSSTSR+L+NEW +P GYSVNVATANA+QV+
Sbjct:  446 SQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDLKNEWFAPVGYSVNVATANATQVL 502          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1_SOLCE (DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.358e-30
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 2
Query:  629 QGLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            Q LLATGGGHLVYLEIGDG+L EVK+A+L+Y+ISCLDINPIGENP Y  I AVGMWTDI  +I+SLPDLNLITKE LGG
Sbjct:  505 QVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCLDINPIGENPNYSNIAAVGMWTDISVRIYSLPDLNLITKEQLGG 583          

HSP 2 Score: 98.5969 bits (244), Expect = 4.842e-20
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    6 SQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVV 176
            SQ QTLFCHDA+YNQLVQVTS SVRLVSSTSR+L+NEW +P GYSVNVATANA+QV+
Sbjct:  451 SQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDLKNEWFAPVGYSVNVATANATQVL 507          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1B_ARATH (DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.502e-29
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 2
Query:  629 QGLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            Q LLATGGGHLVYLEIGDG LTEVKH  LEYE+SCLDINPIG+NP Y  + AVGMWTDI  +IF LPDL LITKE LGG
Sbjct:  500 QVLLATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIFVLPDLTLITKEELGG 578          

HSP 2 Score: 97.8265 bits (242), Expect = 8.260e-20
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    6 SQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVV 176
            S+ QTLFCHDA+YNQLVQVTS SVRLVSST+RELRN+W +P G+SVNVATANASQV+
Sbjct:  446 SEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRNKWDAPAGFSVNVATANASQVL 502          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1A_ARATH (DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.502e-29
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 2
Query:  629 QGLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            Q LLATGGGHLVYLEIGDG LTEV+HA LEYE+SCLDINPIG+NP Y  + AVGMWTDI  +IFSLP+L LITKE LGG
Sbjct:  500 QVLLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIFSLPELTLITKEQLGG 578          

HSP 2 Score: 97.4413 bits (241), Expect = 1.079e-19
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    6 SQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVV 176
            SQ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR+EW +P G++VNVATANASQV+
Sbjct:  446 SQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQVL 502          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1_XENLA (DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  629 QGLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            Q LLA G   L YLEI  G L +    ++E+E++CLD+ P+G N T   + A+G+WTDI  +I SLP   L+ KE LGG
Sbjct:  507 QVLLAVGRV-LYYLEIHPGELRQTSCTEMEHEVACLDVTPLGGNDTLSSLCAIGLWTDISARILSLPGFQLLHKEMLGG 584          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1_PONAB (DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  650 GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            G  L YL+I    L ++ H ++E+E++CLDI P+G++     + A+G+WTDI  +I  LP   L+ KE LGG
Sbjct:  513 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 584          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1_MOUSE (DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  650 GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            G  L YL+I    L ++ H ++E+E++CLDI P+G++     + A+G+WTDI  +I  LP   L+ KE LGG
Sbjct:  513 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 584          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1_HUMAN (DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  650 GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            G  L YL+I    L ++ H ++E+E++CLDI P+G++     + A+G+WTDI  +I  LP   L+ KE LGG
Sbjct:  513 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 584          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1_CERAE (DNA damage-binding protein 1 OS=Cercopithecus aethiops GN=DDB1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  650 GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            G  L YL+I    L ++ H ++E+E++CLDI P+G++     + A+G+WTDI  +I  LP   L+ KE LGG
Sbjct:  513 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 584          
BLAST of EY650361 vs. ExPASy Swiss-Prot
Match: DDB1_RAT (DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  650 GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPTYXXITAVGMWTDIXGKIFSLPDLNLITKEHLGG 865
            G  L YL+I    L ++ H ++E+E++CLD+ P+G++     + A+G+WTDI  +I  LP   L+ KE LGG
Sbjct:  513 GRALYYLQIHPQELRQISHTEMEHEVACLDVTPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 584          
The following BLAST results are available for this feature:
BLAST of EY650361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DDB1_SOLLC1.358e-3079.75DNA damage-binding protein 1 OS=Solanum lycopersic... [more]
DDB1_SOLCE1.358e-3079.75DNA damage-binding protein 1 OS=Solanum cheesmanii... [more]
DDB1B_ARATH1.502e-2978.48DNA damage-binding protein 1b OS=Arabidopsis thali... [more]
DDB1A_ARATH1.502e-2978.48DNA damage-binding protein 1a OS=Arabidopsis thali... [more]
DDB1_XENLA1.668e-1246.84DNA damage-binding protein 1 OS=Xenopus laevis GN=... [more]
DDB1_PONAB1.844e-1141.67DNA damage-binding protein 1 OS=Pongo abelii GN=DD... [more]
DDB1_MOUSE1.844e-1141.67DNA damage-binding protein 1 OS=Mus musculus GN=Dd... [more]
DDB1_HUMAN1.844e-1141.67DNA damage-binding protein 1 OS=Homo sapiens GN=DD... [more]
DDB1_CERAE1.844e-1141.67DNA damage-binding protein 1 OS=Cercopithecus aeth... [more]
DDB1_RAT2.409e-1140.28DNA damage-binding protein 1 OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-B10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650361 ID=EY650361; Name=EY650361; organism=Citrus sinensis; type=EST; length=866bp
TCTGTTCTCAAACACAGACTTTGTTTTGCCATGATGCTATCTACAATCAA
CTTGTGCAAGTAACTTCAGGCTCTGTAAGACTTGTCAGTTCTACATCCAG
GGAGCTGCGAAATGAATGGAAATCTCCGCCCGGTTATTCAGTTAATGTTG
CAACTGCAAATGCAAGCCAGGTTGTTTCCCATCCCATACTATGCCTGGTT
CTGCCTACTCAGAGTCAAGTGTGGTCTTTGCATTCTTAATTCTTTACTCA
GTTGCTTCTTTTAATGGCAAGCCTCACCTTATAAATGGAGTTGCGTGCAG
CCTGACTGGTGTTTCTTTTAATGGCAAACCGGACCTTAAAAATGAATTTG
CATACAGCCTGAGTGGATAAGGAACAAACTGCTTTATAAGCTAGTGGTGT
GGGTGTAGATCATAGTTTTTATCTGTTGCATGTAGGGGTGTGGTCATCCA
AAATAAATCAAGCACAGAAACTCATTTCCATCTCTCTTGTATTTAATATT
TTTACATCTGTTCTGATGACTTTTGGTGAGCTTGAATATTTTAAGTGACC
TCTTGGTATTCTGCTTTAACTTCCAGTTTGGCGTGTGCTAGTTTCAGTTA
ATGGTGTGATTTTTGTACTATTTTATGACAGGGTTTACTAGCAACTGGCG
GTGGACATTTAGTTTATCTAGAAATTGGTGACGGAATATTGACAGAAGTA
AAGCATGCGCAGCTGGAGTACGAGATTTCATGCCTTGACATTAATCCCAT
TGGTGAAAATCCTACCTATANTCANATAACTGCAGTTGGGATGTGGACAG
ATATTANTGGTAAGATATTTTCACTCCCTGACCTGAATCTCATCACTAAG
GAGCATTTGGGAGGAG
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