EY650356

Overview
NameEY650356
Unique NameEY650356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650356 vs. ExPASy Swiss-Prot
Match: ABP2_TOBAC (Auxin-binding protein T92 OS=Nicotiana tabacum GN=T92 PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.140e-78
Identity = 136/171 (79.53%), Postives = 148/171 (86.55%), Query Frame = 3
Query:   93 ADASHCSIKGFPLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFIYEDWSMPHTAAKLKFPYFWDEXCLQSPV-KDEL 602
            A+ASHCSI G PLVRNISELPQ+NYGR GL+H T+AGS+LHGMKEIEVWLQTF+PG RTPIHRHSCEEIFIVLKG GTLYL  SSH K+PG PQE   F NSTFHIPVND HQVWNT E EDLQ+L VISRPPVKVF+Y+DWSMPHTAAKLKFPY+WDE C Q+   KDEL
Sbjct:   17 AEASHCSINGLPLVRNISELPQENYGRSGLSHTTIAGSVLHGMKEIEVWLQTFAPGFRTPIHRHSCEEIFIVLKGQGTLYLTPSSHSKYPGNPQEFHIFPNSTFHIPVNDVHQVWNTGEQEDLQVLDVISRPPVKVFMYDDWSMPHTAAKLKFPYYWDEECYQTTSRKDEL 187          
BLAST of EY650356 vs. ExPASy Swiss-Prot
Match: ABP1_TOBAC (Auxin-binding protein T85 OS=Nicotiana tabacum GN=T85 PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.317e-78
Identity = 134/171 (78.36%), Postives = 149/171 (87.13%), Query Frame = 3
Query:   93 ADASHCSIKGFPLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFIYEDWSMPHTAAKLKFPYFWDEXCLQSPV-KDEL 602
            A+AS CSI G PLVRNISELPQ+NYGR GL+H T+AGS+LHGMKEIEVWLQTF+PG+RTPIHRHSCEEIF+VLKG G LYL  SSH K+PG PQE   F NSTFHIPVND HQVWNT E+EDLQ+LVVISRPPVKVF+Y+DWSMPHTAAKLKFPY+WDE C Q+   KDEL
Sbjct:   17 AEASQCSINGLPLVRNISELPQENYGRSGLSHTTIAGSVLHGMKEIEVWLQTFAPGSRTPIHRHSCEEIFVVLKGQGILYLTPSSHSKYPGNPQEFHIFPNSTFHIPVNDVHQVWNTGEHEDLQVLVVISRPPVKVFMYDDWSMPHTAAKLKFPYYWDEECYQTTSWKDEL 187          
BLAST of EY650356 vs. ExPASy Swiss-Prot
Match: ABP1_ARATH (Auxin-binding protein 1 OS=Arabidopsis thaliana GN=ERABP1 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.949e-70
Identity = 121/165 (73.33%), Postives = 142/165 (86.06%), Query Frame = 3
Query:  108 CSIKGFPLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFIYEDWSMPHTAAKLKFPYFWDEXCLQSPVKDEL 602
            C I G P+VRNIS+LPQDNYGR GL+H+TVAGS+LHGMKE+E+WLQTF+PG+ TPIHRHSCEE+F+VLKGSGTLYLA  +H   PGKP E   FANST HIP+NDAHQV NT  +EDLQ+LV+ISRPP+K+FIYEDW MPHTAA+LKFPY+WDE C+Q   KDEL
Sbjct:   36 CPINGLPIVRNISDLPQDNYGRPGLSHMTVAGSVLHGMKEVEIWLQTFAPGSETPIHRHSCEEVFVVLKGSGTLYLA-ETHGNFPGKPIEFPIFANSTIHIPINDAHQVKNTG-HEDLQVLVIISRPPIKIFIYEDWFMPHTAARLKFPYYWDEQCIQESQKDEL 198          
BLAST of EY650356 vs. ExPASy Swiss-Prot
Match: ABP4_MAIZE (Auxin-binding protein 4 OS=Zea mays GN=ABP4 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.474e-66
Identity = 118/158 (74.68%), Postives = 135/158 (85.44%), Query Frame = 3
Query:  129 LVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFIYEDWSMPHTAAKLKFPYFWDEXCLQSPVKDEL 602
            LVR+IS + Q NYGREG +HITV G++ HG KE+EVWLQTF PG RTPIHRHSCEE+FIVLKG GTL L SSS  K+PG+PQE   F N+TF IPVND HQVWN+NE+EDLQ+LV+ISRPPVK+FIY+DWSMPHTAAKLKFPYFWDE CL +P KDEL
Sbjct:   49 LVRDISRMQQRNYGREGFSHITVTGALAHGTKEVEVWLQTFGPGQRTPIHRHSCEEVFIVLKGKGTLLLGSSSL-KYPGQPQEVPVFQNTTFSIPVNDPHQVWNSNEHEDLQVLVIISRPPVKIFIYDDWSMPHTAAKLKFPYFWDEDCLPAP-KDEL 204          
BLAST of EY650356 vs. ExPASy Swiss-Prot
Match: ABP1_MAIZE (Auxin-binding protein 1 OS=Zea mays GN=ABP1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.145e-62
Identity = 112/168 (66.67%), Postives = 138/168 (82.14%), Query Frame = 3
Query:   99 ASHCSIKGFPLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFIYEDWSMPHTAAKLKFPYFWDEXCLQSPVKDEL 602
            A    ++   LVR+IS++PQ +YG EGL+HITVAG++ HGMKE+EVWLQT SPG RTPIHRHSCEE+F VLKG GTL + SSS  K+PG+PQE  FF N+TF IPVND HQVWN++E+EDLQ+LV+ISRPP K+F+Y+DWSMPHTAA LKFP+ WDE C ++  KDEL
Sbjct:   36 AESSCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSL-KYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEA-AKDEL 201          
BLAST of EY650356 vs. ExPASy Swiss-Prot
Match: ABP5_MAIZE (Auxin-binding protein 5 (Fragment) OS=Zea mays GN=ABP5 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.265e-37
Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = 3
Query:  129 LVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVW 437
            LVR+IS + Q NYGREG +HITV G++ HG KE+EVWLQTF PG RTPIHRHSCEE+FIVLKG GTL L SSS  K+PG+PQE   F N+TF IPVND HQVW
Sbjct:   49 LVRDISRMQQSNYGREGFSHITVTGALAHGTKEVEVWLQTFGPGQRTPIHRHSCEEVFIVLKGKGTLLLGSSS-LKYPGQPQEVPVFQNTTFSIPVNDPHQVW 150          
The following BLAST results are available for this feature:
BLAST of EY650356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ABP2_TOBAC1.140e-7879.53Auxin-binding protein T92 OS=Nicotiana tabacum GN=... [more]
ABP1_TOBAC3.317e-7878.36Auxin-binding protein T85 OS=Nicotiana tabacum GN=... [more]
ABP1_ARATH1.949e-7073.33Auxin-binding protein 1 OS=Arabidopsis thaliana GN... [more]
ABP4_MAIZE8.474e-6674.68Auxin-binding protein 4 OS=Zea mays GN=ABP4 PE=2 S... [more]
ABP1_MAIZE1.145e-6266.67Auxin-binding protein 1 OS=Zea mays GN=ABP1 PE=1 S... [more]
ABP5_MAIZE8.265e-3770.87Auxin-binding protein 5 (Fragment) OS=Zea mays GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-B05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650356 ID=EY650356; Name=EY650356; organism=Citrus sinensis; type=EST; length=930bp
CTGAAACATAAAGCTGGGGCAGCCCGGAGATGGCGAGGTCTTGGTTGATT
TTCTTATGCTTAAGTTTCATTTTATTATCTGCAAATATTGAAGCTGACGC
TTCACATTGCTCAATCAAGGGATTTCCACTTGTAAGGAATATCAGTGAGC
TTCCCCAGGATAACTATGGAAGGGAAGGATTGGCCCACATTACTGTGGCA
GGCTCAATTTTACATGGGATGAAAGAGATTGAAGTTTGGCTGCAAACATT
TTCTCCTGGAACGCGAACACCAATTCATAGGCACTCTTGTGAAGAAATTT
TCATTGTCCTAAAAGGGAGTGGCACTCTCTATCTTGCCTCAAGTTCACAT
GAAAAGCACCCTGGAAAGCCACAAGAACATTTTTTCTTTGCAAATAGCAC
ATTTCACATTCCTGTCAATGATGCTCACCAGGTGTGGAATACAAATGAAA
ACGAGGATTTGCAAATGCTTGTTGTAATATCTCGCCCGCCTGTTAAAGTG
TTTATATACGAAGATTGGTCCATGCCTCATACTGCAGCAAAATTGAAGTT
TCCCTACTTCTGGGATGAANCATGCCTACAATCTCCTGTAAAAGATGAGC
TTTGATTATTAATGCCCCGCACACGGTGGAACAACCGCTTACCGTCACAT
TATTCTTGCAAAACAATAGGATTATGATCGACGTCGATCTTTGTAGAAAA
ATATACTAATGGGGNNGTGTAATTTGTAAGAGGTGAGAATTATAAACACA
TGATACATTGCTACTAGACTATTGCNNAGTTTGACGATCCTTNATTATTT
CAAAGAGCATAAGCTGGTATGGAGAAAAAAAAAAAGTCCCTCCGTCCGGA
ACTTTGCACAAGATTCAAGCTGCGATGGATGGGGAATTAATTTTAGTTAA
GACGTACCATTGGATTTTCCTGACGTTTAA
back to top