EY650342

Overview
NameEY650342
Unique NameEY650342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650342_ssr59 microsatellite EY650342_ssr59:59..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.779e-65
Identity = 120/220 (54.55%), Postives = 141/220 (64.09%), Query Frame = 1
Query:  121 GKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVG 780
            G+ WIK M + A L P MV G  F +N IAI+Y +  AIPFGTMV V  I  F+  PL L+GT++GRN SG PN PCRV  +PRPIPEKKW++ P+V+  +GG+LPFGSIFIEMYF+FTSFW YK+YYVYGFM                   YFLLNAE+Y WQWTSF SAASTA             KTKM G FQ   YFGY       L I+CGA+G
Sbjct:  350 GRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIG 569          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 5.779e-65
Identity = 120/220 (54.55%), Postives = 141/220 (64.09%), Query Frame = 1
Query:  121 GKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVG 780
            G+ WIK M + A L P MV G  F +N IAI+Y +  AIPFGTMV V  I  F+  PL L+GT++GRN SG PN PCRV  +PRPIPEKKW++ P+V+  +GG+LPFGSIFIEMYF+FTSFW YK+YYVYGFM                   YFLLNAE+Y WQWTSF SAASTA             KTKM G FQ   YFGY       L I+CGA+G
Sbjct:  352 GRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIG 571          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.483e-36
Identity = 81/223 (36.32%), Postives = 117/223 (52.47%), Query Frame = 1
Query:  121 GKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVGTLA 789
            G+ W  +++LT+ L P +VF   F++N I    GS AAIPFGT+V +  +W  IS PL  +G   G     A  +P R   IPR IPE+ +Y  P    +MGG+LPFG IFI+++F+  S W++++YY++GF+                   YF L AE+YHWQW SF ++  TA             K ++ G     LYFGYT  +     +  G +G  A
Sbjct:  427 GEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFK-KNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFA 648          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.483e-36
Identity = 81/223 (36.32%), Postives = 117/223 (52.47%), Query Frame = 1
Query:  121 GKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVGTLA 789
            G+ W  +++LT+ L P +VF   F++N I    GS AAIPFGT+V +  +W  IS PL  +G   G     A  +P R   IPR IPE+ +Y  P    +MGG+LPFG IFI+++F+  S W++++YY++GF+                   YF L AE+YHWQW SF ++  TA             K ++ G     LYFGYT  +     +  G +G  A
Sbjct:  427 GEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFK-KNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFA 648          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.483e-36
Identity = 81/223 (36.32%), Postives = 117/223 (52.47%), Query Frame = 1
Query:  121 GKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVGTLA 789
            G+ W  +++LT+ L P +VF   F++N I    GS AAIPFGT+V +  +W  IS PL  +G   G     A  +P R   IPR IPE+ +Y  P    +MGG+LPFG IFI+++F+  S W++++YY++GF+                   YF L AE+YHWQW SF ++  TA             K ++ G     LYFGYT  +     +  G +G  A
Sbjct:  426 GEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFK-KNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFA 647          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.483e-36
Identity = 81/223 (36.32%), Postives = 117/223 (52.47%), Query Frame = 1
Query:  121 GKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVGTLA 789
            G+ W  +++LT+ L P +VF   F++N I    GS AAIPFGT+V +  +W  IS PL  +G   G     A  +P R   IPR IPE+ +Y  P    +MGG+LPFG IFI+++F+  S W++++YY++GF+                   YF L AE+YHWQW SF ++  TA             K ++ G     LYFGYT  +     +  G +G  A
Sbjct:  427 GEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFK-KNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFA 648          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.063e-34
Identity = 80/225 (35.56%), Postives = 113/225 (50.22%), Query Frame = 1
Query:  115 LSGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVGTLA 789
            L G  W K    TA+L+P +VFGI F+LN       S  A+PF TMV +  +W  IS PL  LG   G       +NP R   IPR IPE++WY+   V  +M G+LPFG++FIE++F+F++ W  + YY++GF+                   YF L AE+Y W W +F  +  +A             K  +  F  + LYFGYT  +     +L G +G  A
Sbjct:  405 LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYA 628          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.063e-34
Identity = 80/225 (35.56%), Postives = 113/225 (50.22%), Query Frame = 1
Query:  115 LSGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVGTLA 789
            L G  W K    TA+L+P +VFGI F+LN       S  A+PF TMV +  +W  IS PL  LG   G       +NP R   IPR IPE++WY+   V  +M G+LPFG++FIE++F+F++ W  + YY++GF+                   YF L AE+Y W W +F  +  +A             K  +  F  + LYFGYT  +     +L G +G  A
Sbjct:  404 LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYA 627          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.063e-34
Identity = 80/225 (35.56%), Postives = 113/225 (50.22%), Query Frame = 1
Query:  115 LSGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVGTLA 789
            L G  W K    TA+L+P +VFGI F+LN       S  A+PF TMV +  +W  IS PL  LG   G       +NP R   IPR IPE++WY+   V  +M G+LPFG++FIE++F+F++ W  + YY++GF+                   YF L AE+Y W W +F  +  +A             K  +  F  + LYFGYT  +     +L G +G  A
Sbjct:  405 LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYA 628          
BLAST of EY650342 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.063e-34
Identity = 80/225 (35.56%), Postives = 113/225 (50.22%), Query Frame = 1
Query:  115 LSGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAGXXXXXXXXXXXVKTKMAGFFQNQLYFGYTFDVXPGLRILCGAVGTLA 789
            L G  W K    TA+L+P +VFGI F+LN       S  A+PF TMV +  +W  IS PL  LG   G       +NP R   IPR IPE++WY+   V  +M G+LPFG++FIE++F+F++ W  + YY++GF+                   YF L AE+Y W W +F  +  +A             K  +  F  + LYFGYT  +     +L G +G  A
Sbjct:  404 LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYA 627          
The following BLAST results are available for this feature:
BLAST of EY650342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TM9S3_MOUSE5.779e-6554.55Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S3_HUMAN5.779e-6554.55Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
TM9S2_RAT1.483e-3636.32Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.483e-3636.32Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE1.483e-3636.32Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN1.483e-3636.32Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT1.063e-3435.56Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.063e-3435.56Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.063e-3435.56Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.063e-3435.56Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-A03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650342 ID=EY650342; Name=EY650342; organism=Citrus sinensis; type=EST; length=957bp
CCACGCGTCCGGTGAGTGGTGGGATGTTCTCACGCAATGGGGGTATGACT
TGATCCAATCTCTCTCTCTTTTTTCCCCCTTGTTTGTCTTGGTTTTTTAT
GGTTCTCCTTTGTTTTATCAGGCAAAAACTGGATAAAGTCTATGATCCTC
ACAGCATCCCTTTTTCCATTTATGGTCTTTGGGATTGGGTTCTTATTGAA
CACAATTGCTATATTCTACGGATCTCTAGCCGCTATTCCCTTTGGCACAA
TGGTGGTTGTCTTTGTAATTTGGGCTTTCATTTCTTTCCCTCTGGCACTT
CTTGGCACAGTTGTTGGAAGAAATTGGAGTGGTGCTCCAAATAACCCATG
CCGAGTGAAGACCATTCCTCGCCCAATTCCTGAGAAGAAATGGTATCTCA
CACCCTCTGTGGTCTCAATGATGGGAGGGCTGCTACCTTTTGGCAGTATA
TTCATTGAGATGTATTTTGTCTTCACATCCTTTTGGAATTACAAGGTCTA
CTATGTGTATGGGTTCATGCTGTTGGTTTTTGTGATTCTCATCATTGTGA
CTGTTTGTGTCACAATTGTGGGGACATATTTCCTGCTAAATGCTGAGAAT
TATCACTGGCAATGGACATCATTCTTCTCTGCTGCCTCAACGGCTGGCTA
TGTGTATTTGNACTCAATATANTACTACTATGTGAAGACTAAGATGGCAG
GCTTCTTCCAGAACCAGCTCTATTTTGGCTACACTTTTGATGTTTGNCCT
GGNTTAAGAATCCTCTGTGGAGCTGTGGGTACCCTCGCTCTAATTGGTTG
GAAGGAGGATTATAGAACATCAAGGGGGACTAGACGTGACCAAGAAAAAC
GACCCGAGTGGGCTACCTGAAATTTTTGGCTGAGCCATAAATTTAAAGAG
AACCCTGGTCAATTATTGGGGACCTCCACTTCTGCGATGAATTCCAGGAA
GAGTGGG
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