EY702980

Overview
NameEY702980
Unique NameEY702980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 1.225e-76
Identity = 143/203 (70.44%), Postives = 156/203 (76.85%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            MATSAIQQSAFAGQTAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNG KFGE VWFKAG+QIFS+GGLDYLGNPN    ++       Q+ L G  +              P   G  F+P GL + P
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDP 203          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.728e-76
Identity = 137/170 (80.59%), Postives = 148/170 (87.06%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGL 566
            MATSAI+QSAFAGQTAL+  NE VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNG KFGE VWFKAG+QIFS+GGLDYLGNPN    ++      +Q+ L GL
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGL 170          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.354e-75
Identity = 137/169 (81.07%), Postives = 145/169 (85.80%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG 563
            MATSAIQQSAFAGQTAL+  NE VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNG  FGE VWFKAG+QIFS+GGLDYLGNPN    ++      AQ+ L G
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMG 169          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.553e-74
Identity = 141/203 (69.46%), Postives = 157/203 (77.34%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNG +FGE VWFKAGAQIFS+GGLDYLGNPN    ++       Q+ L GL +              P   G  F+P GL + P
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDP 202          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 9.703e-74
Identity = 132/169 (78.11%), Postives = 145/169 (85.80%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG 563
            MATS IQQSAFAGQT L+  NE VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG KFGE VWFKAG+QIF +GGLDYLGNPN    ++       Q+ L G
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMG 168          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.823e-73
Identity = 137/203 (67.49%), Postives = 151/203 (74.38%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            MATSAIQQSAF G+T LRQ NEF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNG KFGE VWFKAG+QIF++GGLDYLGNPN    ++       Q+ L G  +              P   G  F+P GL + P
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDP 203          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.289e-73
Identity = 133/169 (78.70%), Postives = 141/169 (83.43%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG 563
            MAT AIQQSAF GQ   +  NEF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNG KFGE VWFKAG+QIFS+GGLDYLGNPN    ++       Q+ L G
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMG 169          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.237e-70
Identity = 149/240 (62.08%), Postives = 167/240 (69.58%), Query Frame = 3
Query:   57 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYPIIC--LN*REGAQKRLHG*SSMF*LFH*VLLLGRG 761
            MAT SAIQ S+ AGQT LR Q NE V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG KFGE VWFKAGAQIFS+GGLDY GNPN    ++       Q+ L GL +              P   G  F+P GL + P  C  L  +E    RL    SMF  F   ++ G+G
Sbjct:    1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRL-AMFSMFGFFVQAIVTGKG 238          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.398e-69
Identity = 131/169 (77.51%), Postives = 142/169 (84.02%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG 563
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNG KFGE VWFKAGAQIFS+GGLDYLGNPN    ++       Q+ L G
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.398e-69
Identity = 131/169 (77.51%), Postives = 142/169 (84.02%), Query Frame = 3
Query:   57 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG 563
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNG KFGE VWFKAGAQIFS+GGLDYLGNPN    ++       Q+ L G
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167          
The following BLAST results are available for this feature:
BLAST of EY702980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB21_GOSHI1.225e-7670.44Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_TOBAC2.728e-7680.59Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB26_PETSP1.354e-7581.07Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_LEMGI2.553e-7469.46Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR9.703e-7478.11Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB215_PEA2.823e-7367.49Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB24_SOLLC6.289e-7378.70Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_PINTH2.237e-7062.08Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ9.398e-6977.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI9.398e-6977.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-E02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702980 ID=EY702980; Name=EY702980; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAA
GAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGAC
CGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACG
GTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATC
TGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAAC
ACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCG
CTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAG
GTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCC
TGAAATCCTCTCCAAGAATGGAGCGAAGTTCGGCGAACCAGTTTGGTTCA
AAGCTGGCGCTCAAATATTCTCTAAAGGTGGCCTTGACTATCTTGGGAAC
CCCAACTCATTCATGCTCAGAACATTTTGGCTATCCGGGCCTGCCCAGTT
GTGCTTATGGGGTTTGTCGAAAGATACGAACTGGTGGCGGACCTCTTGGT
GAAGGACTTGACCCACTTAAACCGGGCGGTGTTTTGAACCCCCGGGTTTG
GTGAATTACCCGATTATTTGCTTGAATTAAAGGGAAGGAGCCCAAAAAAG
ACTGCATGGTTAATCTTCCATGTTTTGATTATTTCATTAGGTTTTATTGT
TGGGAAGGGGCTCATTTATAACATCTTCGTCCTCCTGGTGTGATCGGGGG
CCACCTTGTCCGGGGGTATGGCTATTATTTGTTTCTCGGTAAAAAACGCG
CTCCTG
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