EY650307

Overview
NameEY650307
Unique NameEY650307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length967
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 9.320e-79
Identity = 133/177 (75.14%), Postives = 152/177 (85.88%), Query Frame = 1
Query:   40 ISSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 570
            ISS+ +AT NR +   AS+ APFTGLKS+ AFP TKK NND +S+ SNGGR QCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEF LE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+  V+K+VGE  KEYP++F+R+IGFDN RQVQCISFI AKPPGV
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 6.041e-78
Identity = 138/180 (76.67%), Postives = 157/180 (87.22%), Query Frame = 1
Query:   25 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 564
            MASSMISSATVAT +RA+ A A+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGR QCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEF LE  +VYRE+++SPGYYDGRYW MWKLPM+GCTDAT VL ++ E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.758e-77
Identity = 138/182 (75.82%), Postives = 156/182 (85.71%), Query Frame = 1
Query:   25 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 570
            MA SMISSATVA  +RAS A +SMVAPFT LKS+SAFP T+KTNNDITSIASNGGR QCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R   IPCLEF LE G+VYREH++SPGYYDGRYWTMWKLPM+GC D++ VLK++ E  K YP +F+RIIGFDNKRQVQ ISFIA KPPGV
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.329e-76
Identity = 137/183 (74.86%), Postives = 156/183 (85.25%), Query Frame = 1
Query:   25 MASSMISSATVAT--ANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 567
            MASSMISS TVAT  A+R + A A MVAPF GLKSSSAFP T+K+N DITSIASNGGR QCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEF LE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++ VLK++ E  K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.260e-75
Identity = 137/183 (74.86%), Postives = 156/183 (85.25%), Query Frame = 1
Query:   25 MASSMISSATVAT--ANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 567
            MASSMISS TVAT  A+R + A A MVAPFTGLKSSSA P T+K+N DITSIASNGGR QCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEF LE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++ VLK++ E  K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.806e-75
Identity = 129/176 (73.30%), Postives = 150/176 (85.23%), Query Frame = 1
Query:   34 SMISSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 561
            ++ISSA V T NRAS A A++VAPFTGLKSS+ FP TKKTNNDITSIASNGGR  CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEF LEKG+VYRE+H+SPGYYDGRYWTMW+LP++G TD++ VLK++ +   EYP SF+RIIGFDN RQVQCISFIA  P
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.665e-75
Identity = 130/181 (71.82%), Postives = 150/181 (82.87%), Query Frame = 1
Query:   25 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 567
            MASSM+S+ATVA+ NR S A A+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+ QCMKVWP  G+KKFETLSYLPPL+ E L  E+ YL+RSGWIPCLEF LE G VYREH + PGYYDGRYWTMWKLPM+GCTDA  VLK++ E+ K +P  + RIIGFDN RQVQCISF+A KPPG
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.066e-74
Identity = 131/181 (72.38%), Postives = 150/181 (82.87%), Query Frame = 1
Query:   25 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 567
            MASSM+S+A VA  NRAS A ASMVAPFTGLKS+SAFP T+KT  DITSIASNGGR QCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEF LE G VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA  VL+++ E+ K YP  + RIIGFDN RQVQCISF+A KP G
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 2.376e-74
Identity = 131/182 (71.98%), Postives = 156/182 (85.71%), Query Frame = 1
Query:   25 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 567
            MASS++SSA VAT  R+++A ASMVAPFTGLKS+++FP TKK NN DITS+ASNGGR +CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEF  E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDAT VL +V E  K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY650307 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.540e-73
Identity = 132/180 (73.33%), Postives = 149/180 (82.78%), Query Frame = 1
Query:   25 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRFQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFXLEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATHVLKDVGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 564
            MASSM+SSA V T    S A A+MVAPFTGLKSS+AFP T+KTN DITSIASNGGR  CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EF LE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+  VLK+V E  KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY650307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RBS_LACSA9.320e-7975.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR6.041e-7876.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE1.758e-7775.82Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY4.329e-7674.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.260e-7574.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA2.806e-7573.30Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES3.665e-7571.82Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR1.066e-7472.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU2.376e-7471.98Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_ARATH1.540e-7373.33Ribulose bisphosphate carboxylase small chain 3B, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-F02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650307 ID=EY650307; Name=EY650307; organism=Citrus sinensis; type=EST; length=967bp
CCACGCGTCCGGGGACAAGTACCAATGGCTTCCTCAATGATCTCATCGGC
CACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCATGCCAGCATGGTCG
CCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAG
ACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGATTCCAATG
CATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCAT
ACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTT
ATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCNAGTTGGAGAAAGGATG
GGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACT
GGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCATGTT
TTGAAGGATGTTGGGGAGGTCCANAAGGAATACCCACATTCATTCGTCCG
AATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTG
CTGCCAAGCCACCAGGCGTCTAGGTTCCCAATAAATTTGGTAACCACCCA
TGCAATATTGGTGATTATTATTATGTGGAACCCCCATAATGATCATTCCA
TCAATGGGGGTTCGGGTTGCCGTTAATTTGAACTTAAGCTGGTGTTGCTG
CTGCTCAAACTTTTTTGGTTTTCTCCCGACTTGGGCTTCTTTTTTTTTTT
TGAATATATTCAAAATAATGAATCCCTTGTTTTAAGTTCCTTTAANAAAA
AAAAAAGAGAGAATTTTCTGGCTGGGGGAGGAGGTACTCTTCTTAAAAAG
GGGGCGGCGCCTTAAAAGAACAGCTTACTTCCGGGGTTGTGAAGTGATAT
TTTTTTATGGGCCCCAAATTAATCTGTGGGCGCGTTTAAAACGGGGGAGG
GGAAAACCCGGGGGCCA
back to top