EY650304

Overview
NameEY650304
Unique NameEY650304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650304 vs. ExPASy Swiss-Prot
Match: COG5_MOUSE (Conserved oligomeric Golgi complex subunit 5 OS=Mus musculus GN=Cog5 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.141e-25
Identity = 59/177 (33.33%), Postives = 93/177 (52.54%), Query Frame = 2
Query:    2 TRMSSMITGLPPIAAEVLSPSLGTIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAM-DNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIF 529
            T++ +  +     A + +  +L TI+ +  +++  L  ++ D +E+ I+ +H ++FS     +   D   S YM+ELQ  I    +++         +     TE I        A R +  FIR+ASL+RPL E GKLR+A D A++ELAVG     V  LG  YR LR+FRPL+F
Sbjct:  561 TKVVASQSSFSATAEQTIMSALKTIHDLMGNAIQPLLTSVADAIEAIIITMHQEDFSGASSSSGKPDVPCSLYMKELQGFIARVMNDYFKHF--ECMDFVFDNTEAI--------AQRAIELFIRNASLIRPLGEGGKLRLAADFAQMELAVGPLCRRVSDLGKSYRMLRSFRPLLF 727          

HSP 2 Score: 45.8246 bits (107), Expect = 1.141e-25
Identity = 28/94 (29.79%), Postives = 47/94 (50.00%), Query Frame = 1
Query:  526 FLGTSQLGASPLLQDLPP-SVILHHLYSRGPDELQSPLQKNKLTPLQYSLWLDSQ-GEDXIWKGIKATLDDYXXXXXXXXXXXVXPVYSLMLQL 801
            F  +  +  SP + D+ P S+I+  L++R P EL+SP Q+ + +  ++S WLD    E      ++  L+ Y             PVY +M+QL
Sbjct:  727 FQTSEHVADSPAVGDIIPFSIIIQFLFTRAPAELKSPFQRAEWSHARFSQWLDDHPSEKDRLLLLRGALEAYVQSVRSRDGKEFAPVYPIMVQL 820          
BLAST of EY650304 vs. ExPASy Swiss-Prot
Match: COG5_HUMAN (Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.458e-17
Identity = 63/176 (35.80%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   74 IYGVACDSVTSLFQAMIDGLESCILQIHDQNFS-VLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLEHLSWEHLLFFKIFHQVLYFTI 598
            I+ +  ++V  L  ++ D +E+ I+ +H ++FS  L      D   S YM+ELQ  I    S++         +     TE I  R V          FIRHASL+RPL E GK+R+A D A++ELAVG     V  LG  YR LR+FRPL+F    + EH+        V+ F+I
Sbjct:  595 IHALMENAVQPLLTSVGDAIEAIIITMHQEDFSGSLSSSGKPDVPCSLYMKELQGFIARVMSDYFKHF--ECLDFVFDNTEAIAQRAVE--------LFIRHASLIRPLGEGGKMRLAADFAQMELAVGPFCRRVSDLGKSYRMLRSFRPLLF---QASEHVASSPALGDVIPFSI 757          
The following BLAST results are available for this feature:
BLAST of EY650304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COG5_MOUSE1.141e-2533.33Conserved oligomeric Golgi complex subunit 5 OS=Mu... [more]
COG5_HUMAN1.458e-1735.80Conserved oligomeric Golgi complex subunit 5 OS=Ho... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-E11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650304 ID=EY650304; Name=EY650304; organism=Citrus sinensis; type=EST; length=925bp
TACACGCATGTCATCGATGATAACAGGACTGCCTCCAATTGCAGCAGAAG
TGTTGTCTCCCTCTCTTGGGACAATATACGGAGTTGCATGTGACTCAGTT
ACATCCTTGTTCCAAGCAATGATTGACGGTCTTGAGTCTTGCATCTTGCA
AATTCATGACCAGAACTTCAGTGTGCTTGGGATGGATGCTGCCATGGATA
ATAATGCTTCGCCATACATGGAGGAGCTGCAGAAGTGTATTCTTCACTTC
CGTAGTGAGTTTCTATCTAGGCTGTTGCCTTCTTCAGCAAATACTACCAC
TGCAGGGACAGAAACTATATGCACTAGGCTAGTTCGGAGCATGGCTTCCC
GGGTCCTGATATTTTTCATCAGGCATGCTTCTCTTGTAAGACCGTTGTCA
GAATCAGGGAAATTGAGGATGGCCAGAGACATGGCTGAGCTAGAGTTAGC
TGTGGGCCAGAACTTGTTCCCGGTTGAACAACTTGGCGCTCCCTATCGAG
CCCTTCGAGCATTCCGGCCTCTTATTTTCTTGGAACATCTCAGTTGGGAG
CATCTCCTCTTCTTCAAGATCTTCCACCAAGTGTTATACTTCACCATCTT
TACTCTCGGGGTCCTGATGAATTGCAGTCACCGTTGCAGAAGAATAAGCT
TACACCTCTGCAGTATTCATTGTGGCTGGATTCTCAAGGGGAGGATCANA
TATGGAAAGGTATTAAAGCTACTCTGGATGATTATGCTGCAAAAGCTAGG
GCAAGANGGAGGACAAGAGTCANCCCTGTATATTCTCTCATGCTCCAACT
GGGATCANCTTTTGANTGTAAGGCTCCTGGATCTCAAAAGTCTTGAATAC
TGGCTTACATCCTGTAACCTATTGATTCTCCGAGAATGAATANCCTTTTG
CCAAATGGCGATTTTTGCTTTAGGA
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