EY702963

Overview
NameEY702963
Unique NameEY702963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702963_ssr48 microsatellite EY702963_ssr48:48..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10024 contig Csv1_Contig10024:1..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.723e-55
Identity = 125/192 (65.10%), Postives = 141/192 (73.44%), Query Frame = 1
Query:  310 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            MERARRLA++A L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT  P VILRNI  N
Sbjct:    1 MERARRLANKAILGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTSVPTVILRNIMEN 171          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.692e-53
Identity = 124/192 (64.58%), Postives = 138/192 (71.88%), Query Frame = 1
Query:  310 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT  P VILRNI  N
Sbjct:    1 MERARRLA---ILGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTSVPTVILRNIMEN 168          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 8.004e-53
Identity = 123/192 (64.06%), Postives = 138/192 (71.88%), Query Frame = 1
Query:  310 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPK+IR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT  P VILRNI  N
Sbjct:    1 MERARRLA---MLGRLVSQTK-----HNPS---ISSSALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKAIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTSVPTVILRNIMEN 168          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.045e-52
Identity = 123/192 (64.06%), Postives = 137/192 (71.35%), Query Frame = 1
Query:  310 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VC   N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT  P VILRNI  N
Sbjct:    1 MERARRLA---MLGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCGGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTSVPTVILRNIMEN 168          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.365e-52
Identity = 115/191 (60.21%), Postives = 132/191 (69.11%), Query Frame = 1
Query:  310 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            MERAR+LA+RA LKRLV++SKQ   N   S         Y PSRY+SSLS   F   NN++S   Q                Q R ISVEALKPSDTF RRHNSATPE+Q KM+E  G  +LD+LIDATVP+SIR +SMK  KFD GLTESQMIEHMQ LAS NKV+KS+IGMGYYNT+ PPVILRN+  N
Sbjct:    1 MERARKLANRAILKRLVSQSKQSRSNEIPSSSL------YRPSRYVSSLSPYTFQARNNAKSFNTQ----------------QARSISVEALKPSDTFPRRHNSATPEEQTKMAEFCGFQSLDALIDATVPQSIRSESMKLPKFDSGLTESQMIEHMQNLASKNKVFKSYIGMGYYNTYVPPVILRNLLEN 169          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.365e-52
Identity = 117/192 (60.94%), Postives = 134/192 (69.79%), Query Frame = 1
Query:  310 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSK-FDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            MERARRLA R  +KRLVNE+K+    HR  +       T TPSRY+SS+S       + S S    S    H          QTR ISV+ALKPSDTF RRHNSATP++QA+M+   G DNL++LID+TVPKSIR+DSMKFS  FDEGLTESQMIEHM  LAS NKV+KSFIGMGYYNTH PPVILRNI  N
Sbjct:    1 MERARRLAYRGIVKRLVNETKR----HRNGESSLLPTTTVTPSRYVSSVSSFLHRRRDVSGSAFTTSGRNQH----------QTRSISVDALKPSDTFPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEHMSDLASKNKVFKSFIGMGYYNTHVPPVILRNIMEN 178          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.783e-52
Identity = 118/198 (59.60%), Postives = 141/198 (71.21%), Query Frame = 1
Query:  310 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTP-------SRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            MERARRLA+RA LKRL++E+KQ    +R+++       T  P       SRY+SS+S +  +    S+ D   SR +      G G  SQ+R ISVEALKPSDTF RRHNSATP++Q KM+E VG D LDSL+DATVPKSIR+  MKF+KFD GLTE QMIEHM+ LAS NKV+KSFIGMGYYNTH PPVILRNI  N
Sbjct:    1 MERARRLANRATLKRLLSEAKQ----NRKTESTSTTTTTPLPFSLSGSSSRYVSSVSNS-ILRGRGSKPDNNVSRRVG--GFLGVGYPSQSRSISVEALKPSDTFPRRHNSATPDEQTKMAESVGFDTLDSLVDATVPKSIRLKEMKFNKFDGGLTEGQMIEHMKDLASKNKVFKSFIGMGYYNTHVPPVILRNIMEN 191          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.971e-51
Identity = 112/191 (58.64%), Postives = 138/191 (72.25%), Query Frame = 1
Query:  310 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            MERARRLA R  +KRLVN++K+    HR ++        + P+RY+SSLS  PF+ +          R+++H     +G   QTR ISV+A+KPSDTF RRHNSATP++Q  M++  G D++DSLIDATVPKSIR+DSMKFSKFD GLTESQMI+HM  LAS NKV+KSFIGMGYYNTH P VILRNI  N
Sbjct:    1 MERARRLAYRGIVKRLVNDTKR----HRNAETPHLVP--HAPARYVSSLS--PFIST---------PRSVNH--TAAFGRHQQTRSISVDAVKPSDTFPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSIRLDSMKFSKFDAGLTESQMIQHMVDLASKNKVFKSFIGMGYYNTHVPTVILRNIMEN 172          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_RALEJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia eutropha (strain JMP134) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.207e-16
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  583 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRI-DSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRNQLGHSVHS 906
            L+  D FA RH      +Q  M +++G D+  +LIDA +P++IR  D M   +F E L E   +  ++KLA  NKV KSFIG GYYNT  P V+LRNI+ N   ++ ++
Sbjct:   20 LEARDAFAARHIGPDTPEQQHMLKVLGYDSRAALIDAVIPEAIRRRDGMPMGEFTEPLPEEAALAKLRKLAGKNKVLKSFIGQGYYNTLTPAVVLRNIFENPAWYTAYT 128          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_BURPP (Glycine dehydrogenase [decarboxylating] OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gcvP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.587e-16
Identity = 42/114 (36.84%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  568 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRNQLGHSVHS 906
            +S+ AL+  D FA RH      DQ  M E +G  +  +LIDA +PK+IR  +++    F +  +E++ +  +++LA  N+V++S+IG GYYN H P VILRN+  N   ++ ++
Sbjct:   15 LSLAALEVHDAFAERHIGPDAADQHAMLEALGFASRAALIDAVIPKTIRRTETLPLGPFTQPKSEAEALAALRELADKNQVFRSYIGQGYYNAHTPTVILRNVLENPAWYTAYT 128          
The following BLAST results are available for this feature:
BLAST of EY702963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
GCSPA_FLAPR1.723e-5565.10Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSPB_FLAPR4.692e-5364.58Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR8.004e-5364.06Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN1.045e-5264.06Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU1.365e-5260.21Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH1.365e-5260.94Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_PEA1.783e-5259.60Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH1.971e-5158.64Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_RALEJ1.207e-1642.20Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_BURPP4.587e-1636.84Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-C07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702963 ID=EY702963; Name=EY702963; organism=Citrus sinensis; type=EST; length=906bp
CACGCGTCCGCGGACGCGTTGCGTAGATAGATAGTATTGTCCTCTCTTCT
CTCTCTCTCTCTCTATATATATTGTTTATATAGACAAAATTATCAGCATA
TGAATCATCAGTTTATTTATCACCAACCCCCTACCCCCACTGACTCTTAT
GTAACAAAAATATTTACTTTATTGAAAAACTACTCTTTTTATCTTCTCAA
CAACCCCATTTGCCTTGCTTTGCCTTGCTTCTTGTGAAGTTATTTCCTTT
TTTGAAGTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTC
ACTTCATTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAA
ACGCCTGGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAA
AATCATCAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCT
TCATTGTCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTT
GTTGCAATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCG
GGTCACAGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACT
TTTGCTCGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTC
TGAGTTAGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGC
CTAAATCTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGG
TTAACCGAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAA
TAAGGTTTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGNTC
CCCCTGTGATTTTGAGGAACATATGGAGAAATCAGCTTGGTCACTCAGTA
CACTCA
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