EY702961

Overview
NameEY702961
Unique NameEY702961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702961_ssr145 microsatellite EY702961_ssr145:145..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.282e-53
Identity = 105/143 (73.43%), Postives = 116/143 (81.12%), Query Frame = 3
Query:  183 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGTP 611
            +A V DFCVAD K  D PAGY C  PA VT +DFV+SGLG+AGNTT+II AAVTPAF AQFP VNGLG+SLARLDL  GGVIP HTHP ASE+LLVV G I AGF++S  NT Y+KTLKKGDIM+FPQGLLHFQVN G  GTP
Sbjct:   17 HASVQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIMVFPQGLLHFQVNGG--GTP 156          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.419e-52
Identity = 99/138 (71.74%), Postives = 113/138 (81.88%), Query Frame = 3
Query:  183 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 596
            +A V DFCVAD K  D PAGY C  PA+VT +DFV+SGLG+AGNTT+I  AAVTPAF AQFP VNGLG+SLARLDL  GGV+P HTHP ASE+LLVV G I AGF++S  NT Y+KTLKKGDI++FPQGLLHFQVN G
Sbjct:   17 HASVQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIIVFPQGLLHFQVNGG 153          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.159e-52
Identity = 100/138 (72.46%), Postives = 115/138 (83.33%), Query Frame = 3
Query:  183 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 596
            NA V DFCVA+LK +++PAGYPC+ P  V A DFVFSGLG  GNTT+IINAAVTPAF AQFP +NGLGLS ARLDLA  GVIPMHTHP ASE+L V+ G ITAGF+ SSAN VYV+TLK G +M+FPQGLLHFQ+N+G
Sbjct:   16 NASVQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFV-SSANAVYVQTLKPGQVMVFPQGLLHFQINAG 152          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.016e-50
Identity = 96/138 (69.57%), Postives = 113/138 (81.88%), Query Frame = 3
Query:  183 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 596
            NA V DFCVADL   + PAG+ C  PA V  +DFVFSGLG+AGNT++II AAVTPAFVAQFP VNGLG+S+ARLDLA GGV+P HTHP ASE+L+V  G I AGF++S  NT Y++TL+KGDIM+FPQGLLHFQVN G
Sbjct:   22 NAAVQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD-NTPYLQTLEKGDIMVFPQGLLHFQVNGG 158          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.467e-49
Identity = 98/138 (71.01%), Postives = 115/138 (83.33%), Query Frame = 3
Query:  183 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 596
            N  V DFCVA+LK +++PAGYPC+ P  V A DFVFS LG  GNTT+II+AAVTP FVAQFPA+NGLG+S ARLDLA  GVIPMHTHP ASE+L V+ G ITAGFI SSAN+VYV+TLK G +M+FPQGLLHFQ+N+G
Sbjct:   16 NDSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFI-SSANSVYVQTLKPGQVMVFPQGLLHFQINAG 151          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.720e-48
Identity = 91/137 (66.42%), Postives = 109/137 (79.56%), Query Frame = 3
Query:  186 AMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 596
            A+  DFCVADL  SD+PAGYPC   A V A DF + GL  AGNT+++I AAVTPAFV QFP VNGLG+S ARLD+A GGV+P+HTHPAASE+L V  G + AGFI+SS+NTVY +TL  GDIM+FPQGLLH+Q N+G
Sbjct:   23 ALTQDFCVADLTCSDTPAGYPC--KASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAG 157          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.518e-46
Identity = 92/137 (67.15%), Postives = 108/137 (78.83%), Query Frame = 3
Query:  186 AMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 596
            A V DFCVAD K   SP+GY C  P  VT +DF F+GLG AGNT++II AAVTPAF   +  +NGLG+SLARLDLA GGVIP+HTHP ASE+L+V+ G I AGFI SSAN VY+KTL +GD M+FPQGLLHFQ+NSG
Sbjct:   20 ASVQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFI-SSANKVYLKTLNRGDSMVFPQGLLHFQLNSG 155          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.679e-45
Identity = 91/137 (66.42%), Postives = 107/137 (78.10%), Query Frame = 3
Query:  186 AMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 596
            A V DFCVAD K   +P+GY C  P  VT +DF FSGLG AGNT+++I AAVTPAF   F  +NGL +SLARLDLA GGVIP+HTHP ASE+L+V+ G I AGFI SSAN VY+KTL +GD M+FPQGLLHFQ+NSG
Sbjct:   20 ASVQDFCVADPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFI-SSANKVYLKTLSRGDSMVFPQGLLHFQLNSG 155          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.269e-42
Identity = 97/151 (64.24%), Postives = 109/151 (72.19%), Query Frame = 3
Query:  183 NAMVNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGTPRFC*LQQ 632
            NA VNDFCVA+     D+P+G+ C   A VTA DFV+SGL   GNTT+IINAAVTPAFV QFP V GLG++LARLDLA GGVIPMHTHP ASEIL VV G I A FI SS N VY K L  GD+M+FPQGLL FQ  +G    P  C L+Q
Sbjct:   21 NASVNDFCVANGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFI-SSGNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQ 169          
BLAST of EY702961 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.425e-36
Identity = 75/138 (54.35%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  186 AMVNDFCVADLKL-SDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 596
            A+  DFCVA+L L +D+P+GY C P A VTA DF    L   G      N ++  AFV Q+PAVNGLG+S +R+D+  GGV+P+HTHPA SE+L V+ G + AGFISSS N VY K + KG + +FPQGLLHFQ N+G
Sbjct:   26 ALTQDFCVANLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTG 163          
The following BLAST results are available for this feature:
BLAST of EY702961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
AB19A_PRUPE1.282e-5373.43Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
AB19B_PRUPE2.419e-5271.74Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL31_ARATH3.159e-5272.46Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
ABP20_PRUPE1.016e-5069.57Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GLP1_BRANA1.467e-4971.01Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL814_ORYSJ4.720e-4866.42Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL33_ARATH1.518e-4667.15Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_SINAL1.679e-4566.42Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GLP1_IPONI2.269e-4264.24Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL813_ORYSJ1.425e-3654.35Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-C03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702961 ID=EY702961; Name=EY702961; organism=Citrus sinensis; type=EST; length=937bp
GGGGGGGGGGGGTGTGGGTTGTGTTTTGTGTGNNNNCCCAAANNNNAAAA
TGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCGACCCACGCGTCCG
ATCAAAATAACTACACTAAATATTAGTCAAAATGCTTCACATTCTCTTCT
TCTTCTTCCTTGCTTTCGTATCCTCTTCCTCCAATGCTATGGTTAACGAC
TTCTGCGTCGCTGACCTAAAGCTGTCGGATAGTCCCGCCGGCTATCCTTG
CGTGCCCCCTGCTATGGTTACCGCTGACGACTTCGTATTTTCGGGCCTCG
GCGTGGCCGGAAACACCACGAGTATTATCAACGCGGCAGTGACACCTGCA
TTTGTAGCTCAATTTCCGGCCGTGAATGGCCTCGGACTCTCCTTGGCACG
CCTAGATCTTGCAAAGGGTGGCGTAATCCCAATGCACACTCATCCAGCTG
CTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGCCGGGTTCATT
TCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGAAGGGAGATAT
CATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAATTCCGGCGCGG
ACGGAACCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCCTGGACTCCA
AATCACCGATTTCGCCTTATTTGGCAACAACTTGTCTTCCCAATTGGTGG
AGCAAACACTTTTCCTTGAACATGCTTCGGGGAAAAGGCTCAAAGGGATC
CTTGGGGGGGAACCGGCTAGGCTTATTAATTTACAAATTCCTTCCATTGG
AAGTTTGAAGTCCTTAATTTCATTTAACTGCCAAGTGAATTTGAATGCTG
GAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGCGCCTCAAAA
GAACCAAGCTTACCAACCCGGGCATTGAAAGTATATA
back to top