EY650231

Overview
NameEY650231
Unique NameEY650231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650231_ssr75 microsatellite EY650231_ssr75:75..92. BLAST: Citrus ESTs to Prunus persica proteins V1
EY650231_ssr316 microsatellite EY650231_ssr316:316..327. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig839 contig Csv1_Contig839:37..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650231 vs. ExPASy Swiss-Prot
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.960e-13
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 2
Query:  791 EKMQRGPQSKSFQYRGVTFYRRTGRWGSHLWDSGNQCYL 907
            +K +RGP+S+S QYRGVTFYRRTGRW SH+WD G Q YL
Sbjct:  119 KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYL 157          

HSP 2 Score: 29.261 bits (64), Expect = 1.960e-13
Identity = 31/125 (24.80%), Postives = 40/125 (32.00%), Query Frame = 1
Query:  355 MWDLND----SLKDIEESEACSSQKTSIDGDDEKGKQXXXXXXXXXXXXXIENGSDEEIGASEXXXXXXXXXXKIFGVCLYQEAMEESEPEPPVTRQFFPVDFHEQQATSSEAGAXGLAFPRANW 717
            MWDLND    + ++ E  E C S  +         K+             IE+GSD++                        E        P VT QFFP          S  G     FPRA+W
Sbjct:    1 MWDLNDAPHQTQREEESEEFCYSSPS---------KRVGSFSNSSSSAVVIEDGSDDD------------------------ELNRVRPNNPLVTHQFFP-------EMDSNGGGVASGFPRAHW 85          
BLAST of EY650231 vs. ExPASy Swiss-Prot
Match: TOE3_ARATH (AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.824e-11
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  746 PSWSWKNRY*SXSAP-EKMQRGPQSKSFQYRGVTFYRRTGRWGSHLWDSGNQCYL 907
            PS S +      S P +K +RGP+S+S QYRGVTFYRRTGRW SH+WD G Q YL
Sbjct:   68 PSGSGRPEEPEISPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYL 122          

HSP 2 Score: 21.1718 bits (43), Expect = 2.824e-11
Identity = 11/29 (37.93%), Postives = 13/29 (44.83%), Query Frame = 1
Query:  619 PVTRQFFPVDFHEQQATSSEAGAXGLAFP 705
            PVTR FFP    E     S   + G + P
Sbjct:   40 PVTRNFFPAQSMEPGVRWSGFNSVGKSDP 68          
BLAST of EY650231 vs. ExPASy Swiss-Prot
Match: TOE2_ARATH (AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 2
Query:  791 EKMQRGPQSKSFQYRGVTFYRRTGRWGSHLWDSGNQCYL 907
            +K +RGP+SKS QYRGVTFYRRTGRW SH+WD G Q YL
Sbjct:  148 KKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYL 186          
The following BLAST results are available for this feature:
BLAST of EY650231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AP2_ARATH1.960e-1371.79Floral homeotic protein APETALA 2 OS=Arabidopsis t... [more]
TOE3_ARATH2.824e-1160.00AP2-like ethylene-responsive transcription factor ... [more]
TOE2_ARATH4.638e-1174.36AP2-like ethylene-responsive transcription factor ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-008-G04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650231 ID=EY650231; Name=EY650231; organism=Citrus sinensis; type=EST; length=938bp
GCAGTGATAGTAGTATTTACGAGATCTTGAAACATCTCCCCTTACTACTA
CCTTTTTGCAAACCCTTCTGGCCTTCTCTCTCTCTCTCTCTCTGTGTCGT
AGGTTCTCTTCTACTTTGAATACTCAACCTTCAAGTTTTCTTCCTTTCTA
TATTTATTCTTTTCTCTCTTGTCGAACAAGAGATAGAGAGAATTTTGAAA
AATAAAAAAAATACATAAACAAACCTGTGATCTTTGACGACGAAGTGATG
ATCAGAATTGAGAGTGTTTGTCGCTTCTAAGATCGGGAAAAAAGTATACA
GAGTGTGTTTAACATATAAATAAATAAATCGTGAGAATTTTTTCTTTTTA
AAAAATGTGGGATCTGAATGACTCGCTGAAAGATATAGAAGAGTCAGAAG
CTTGCTCATCGCAAAAGACCTCCATAGATGGCGATGATGAGAAGGGAAAA
CAAGTGGGATCCGTTTCGAATTCAAGCTCTTCAGCCGTGGTAATAGAAAA
CGGATCCGACGAAGAGATTGGTGCTTCTGAGAGAAGATTATTAAGTCGTA
GTGGCGGCAGTAAAATATTTGGAGTATGTTTGTATCAAGAAGCCATGGAG
GAGAGTGAACCAGAGCCACCGGTGACCCGGCAGTTTTTTCCTGTTGATTT
TCATGAGCAGCAAGCCACATCGAGTGAAGCTGGAGCTANGGGACTGGCCT
TCCCTCGGGCTAACTGGGTTGTGTCAAGTTTTGCCAATNCGAGCCCCATC
GTGGAGCTGGAAAAATCGNTATTGAAGCTNCTCAGCCCCTGAAAAAATGC
AGCGTGGACCCCAGTCAAAGAGTTTCCAGTATAGAGGTGTCACCTTTTAC
AGAAGAACTGGNAGATGGGGATCTCATTTATGGGATTCTGGGAATCAATG
TTATCTAGTGGATTTGACCCTGNCCATGCAGCTGCTCC
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