EY650138

Overview
NameEY650138
Unique NameEY650138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7547 contig Csv1_Contig7547:315..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650138 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.497e-26
Identity = 67/159 (42.14%), Postives = 100/159 (62.89%), Query Frame = 2
Query:    2 DLMGLLTVDGRERVNLAVRDVVSSDPYVVINMGKQNLKTQXXXXXXXPEWNEDLTLSISDSNLAIKLTVYDKDTFSPDDKMGDAEFYITPFLEALKM--RLEGLPNGTIGTKIQPSRENCLAE*SHIVWTDGKLAQNLFLRLRNVEVGEVEIQLEWIDI 472
            + +GLL V  ++  NLA+RD++SSDPYVV+N+GKQ L+T        P WN++L LS+ +S   +KL VYD DTFS DD MG+A+  I P + +       E   +  IG K   S +N L + S I   DGK+ Q + ++L+NVE GE+E+++EW+ +
Sbjct:  177 EFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIG-KWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVESGELELEMEWLPL 334          
BLAST of EY650138 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 69/162 (42.59%), Postives = 99/162 (61.11%), Query Frame = 2
Query:    2 DLMGLLTVDGRERVNLAVRDVVSSDPYVVINMGKQNLKTQXXXXXXXPEWNEDLTLSISDSNLAIKLTVYDKDTFSPDDKMGDAEFYITPFLEALKMRLEGLPNGTIGTKIQ-----PSRENCLAE*SHIVWTDGKLAQNLFLRLRNVEVGEVEIQLEWIDI 472
            + +GL+ V+  +  NLAVRDV++SDPYV++ +G+Q++KT+       P WNE L LSI +    +K+ VYDKDTFS DD MG+AE  I P + A K         +I   +Q      S+EN L     I+  DGK+ Q++ LRL+NVE G +EIQLE + +
Sbjct:  226 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAK----AYETSSIKEPMQLGSWVASKENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383          
BLAST of EY650138 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 63/159 (39.62%), Postives = 98/159 (61.64%), Query Frame = 2
Query:    2 DLMGLLTVDGRERVNLAVRDVVSSDPYVVINMGKQNLKTQXXXXXXXPEWNEDLTLSISDSNLAIKLTVYDKDTFSPDDKMGDAEFYITPFLEALKM--RLEGLPNGTIGTKIQPSRENCLAE*SHIVWTDGKLAQNLFLRLRNVEVGEVEIQLEWIDI 472
            + +GLL V  ++  N+A+RD++SSDPYVV+ +G+Q  ++        P WNE+L LS+  +  ++KL V+D DTFS DD MG+AE  I P + +       E   +  IG K   S +N L E S I   DGK+ Q + ++L+NVE GE+E+++EW+ +
Sbjct:  178 EFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIG-KWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGELELEMEWLPL 335          
The following BLAST results are available for this feature:
BLAST of EY650138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD13_ARATH2.497e-2642.14Probable ADP-ribosylation factor GTPase-activating... [more]
AGD11_ARATH4.259e-2642.59Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH2.337e-2439.62ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-F10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650138 ID=EY650138; Name=EY650138; organism=Citrus sinensis; type=EST; length=714bp
AGATTTGATGGGTTTGCTCACAGTTGATGGGCGTGAGAGAGTGAATCTTG
CCGTCAGAGATGTCGTCAGCAGTGATCCTTATGTTGTGATCAACATGGGA
AAACAGAACTTGAAGACTCAAGTTGTGAATAACAATGTCAATCCTGAGTG
GAATGAAGATTTAACCCTCTCTATTTCAGACTCTAATCTGGCAATCAAGC
TTACAGTTTATGACAAAGACACATTCAGTCCAGATGACAAAATGGGAGAT
GCAGAATTTTACATCACTCCATTTTTGGAAGCTCTAAAGATGCGATTGGA
AGGCCTCCCAAATGGAACCATTGGCACGAAAATACAGCCAAGCAGGGAGA
ACTGCCTTGCTGAATAGAGCCACATTGTCTGGACTGATGGTAAGCTTGCT
CAAAACTTGTTTCTAAGACTTCGAAATGTTGAGGTGGGTGAAGTTGAAAT
CCAATTAGAGTGGATTGACATACCTGGTTCCAGGGGCCTGTAGATGACAT
CTACGCACTCTCAGCTGCTAATAAGCATAGTGTACAAAAAAGTCTCTGAT
CATCATTAACGGGCTCAGTTGGAGTTTCTTCAATCAGTTACTCTTATTCA
CATAAATATCTTGCTGCTTACCTTTTGACTGGATTTTAATTATTAATGCT
GTGCATATCAAAAAAAAAGACAANGAAGCGGGGCGCTGTCCCTCTTTTTA
GCCCCGAGGCCAAC
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