EY650105

Overview
NameEY650105
Unique NameEY650105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650105_ssr675 microsatellite EY650105_ssr675:675..686. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.241e-52
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 1
Query:  247 MGDSDNDSGGER*--RQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            MGDSD DSGG +    Q+G S  LSPREQDRFLPIANVSRIMKKALPANAKISKDAKET+QECVSEFISFVTGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQRFRE+EGE
Sbjct:    1 MGDSDRDSGGGQNGNNQNGQS-SLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.520e-51
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 1
Query:  247 MGDSDNDSGGER*RQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            M DSDNDSGG     H      S REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF+TGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQ++RE+EGE
Sbjct:    1 MADSDNDSGG-----HKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGE 114          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.721e-45
Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 1
Query:  250 GDSDNDSGGER*RQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            G   ++SG  R    G     S REQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYLQ++REMEG+
Sbjct:   11 GGGSHESGSPR----GGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.317e-44
Identity = 87/118 (73.73%), Postives = 101/118 (85.59%), Query Frame = 1
Query:  250 GDSDNDSGGER*RQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            G   ++SGG++     S R L+ REQDRFLPIAN+SRIMK+ LP N KI+KDAKET+QECVSEFISFVT EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLKVYL R+REMEG+
Sbjct:   10 GGGSHESGGDQ-----SPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.720e-44
Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 1
Query:  250 GDSDNDSGGER*RQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            G   ++SGG++     S R L  REQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISFVT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYL R+REMEG+
Sbjct:   11 GCGSHESGGDQ-----SPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 5.004e-44
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 1
Query:  319 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            REQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYLQ++REMEG+
Sbjct:   37 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.990e-42
Identity = 82/119 (68.91%), Postives = 97/119 (81.51%), Query Frame = 1
Query:  247 MGDSDNDSGGER*RQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            M D+ +   G+     G     S REQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVSEFISF+T EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK+YL R+RE+EG+
Sbjct:    1 MADTPSSPAGD-----GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD 114          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.036e-41
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 1
Query:  319 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            +EQDRFLPIANV RIMKK LP N KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLKVYL ++R+ EGE
Sbjct:   35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGE 129          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.968e-40
Identity = 83/119 (69.75%), Postives = 98/119 (82.35%), Query Frame = 1
Query:  247 MGDSDNDSGGER*RQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 603
            M D+ +D  G   R  G       REQDRFLPIAN+SRIMKKA+PAN KI+KDAKET+QECVSEFISFVT EASDKCQ+EKRKTING+DLL+AM TLGFEEYV+PLK+YL ++RE+ G+
Sbjct:   15 MADAGHDESGSPPRSGGV------REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGD 127          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NFYB_DICDI (Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.406e-38
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 1
Query:  250 GDSDNDSGGER*RQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREME 597
            G S+N+SGG       ++     REQDR+LPIAN+ RIMKKALP NAK++KDAKETVQ+CVSEFISF+T EASDKCQ+EKRKTING+D++ AM +LGFE YVEPLKVYL ++RE E
Sbjct:   28 GSSNNNSGGNA----NNNNNEGDREQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVEPLKVYLLKYRETE 139          
The following BLAST results are available for this feature:
BLAST of EY650105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NFYB2_ARATH2.241e-5287.60Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB3_ARATH5.520e-5184.87Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB_MAIZE7.721e-4575.42Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYBA_ARATH1.317e-4473.73Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB8_ARATH1.720e-4475.42Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYB3_ORYSJ5.004e-4487.37Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB1_ARATH7.990e-4268.91Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB7_ARATH3.036e-4184.21Nuclear transcription factor Y subunit B-7 OS=Arab... [more]
NFYB2_ORYSJ1.968e-4069.75Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB_DICDI2.406e-3867.24Nuclear transcription factor Y subunit beta OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-C06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650105 ID=EY650105; Name=EY650105; organism=Citrus sinensis; type=EST; length=885bp
CTTGAGTTTTGTCTTCAAAGTTTTAATGGGTGATGATTTTACCTGAAATC
CAAAGGAATTTTTTTTTTTTTAAAAAAAAAAAATTGTGCTTCAAGCTAGC
TAGCCTTATAATTAACGTTTTCATGCATGCACTTAGAATTCAGTAAAAGC
TTCAAATTTTCTTCCGCAAAGCCTTCAATTTAAGCACCACCCTTCACCAG
AAGTACATAAAAAGCTTTTTAATTTAAGTTCATCTCCAAAATAATCATGG
GAGACTCGGATAATGATTCGGGAGGTGAAAGATAGAGGCAGCACGGCTCA
TCCAGGGAGCTGTCGCCGAGGGAGCAGGACAGGTTCCTGCCGATAGCAAA
CGTGAGCAGGATCATGAAAAAGGCCCTGCCCGCGAATGCCAAGATATCCA
AGGATGCCAAGGAGACCGTGCAAGAGTGCGTCTCCGAGTTCATTAGCTTC
GTCACCGGCGAGGCCTCCGATAAGTGCCAGAGGGAGAAGCGAAAGACCAT
CAATGGAGACGATCTCCTGTGGGCAATGACCACTCTGGGCTTCGAGGAAT
ACGTGGAGCCGCTCAAGGTTTACCTGCAGAGGTTCAGGGAGATGGAAGGG
GAGTAAATGGCGCGTGACAAGGACGCGCCGGCAGGTCACTGTGTTGGCGG
TGCGATTGGCGGATACTACGGCGGGATGATGATGATGGGACACNNGAGGT
AACTCAATCAGGGGACGTGATGGCTCTGGTGGGTTTATCATCAATGGCTT
AGTGCCCAAGGGTGGGCCCTACATTGGNTGTAGCTTAGTACGCCANATAG
GGGAAAGAGTCTGGAGGTGGATCTCTGAGACGGGAACCCGTACGGTGAAA
TNCGGGGGACATGGGATTGAACTCTGGGGCTACTN
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