EY650060

Overview
NameEY650060
Unique NameEY650060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_SPIOL (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.214e-93
Identity = 178/224 (79.46%), Postives = 193/224 (86.16%), Query Frame = 1
Query:   94 MSTGSLCSST--THINGFTGGFMLQKT--NLNQPSSLSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKKSQT*EEMC 753
            MS  SLC ST  + INGF GG  ++K   + + P+SL+FTR ++ T+VKA++RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T LS IE VLDV DL LIMSVNPGFGGQ  IESQVKK     +MC
Sbjct:    1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMC 224          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_SOLTU (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.484e-91
Identity = 176/237 (74.26%), Postives = 194/237 (81.86%), Query Frame = 1
Query:   97 STGSLCSSTTHINGFTGGFMLQKTNLNQPSSLSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKKSQT*EEMC*RRE*T-HD*IXGXVGPK 804
            S GS     + I+GF G   LQK + + P+SL+FTR RI T+V AS+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD  DL LIMSVNPGFGGQ  IESQVKK     ++C  R       + G VGPK
Sbjct:    1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPK 237          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_ORYSJ (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 3.314e-83
Identity = 158/188 (84.04%), Postives = 169/188 (89.89%), Query Frame = 1
Query:  190 LSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKKSQT*EEMC 753
            L+F+  R    V+AS+RVDKFSK+DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDV DL LIMSVNPGFGGQ  IESQVKK      +C
Sbjct:   26 LAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLC 213          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_SYNY3 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 4.079e-57
Identity = 110/167 (65.87%), Postives = 134/167 (80.24%), Query Frame = 1
Query:  262 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKKSQT*EEMC*RR 762
            +I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T L  +E VL V DL LIMSVNPGFGGQ  I   + K +   +MC  R
Sbjct:    4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDER 170          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_BACSU (Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.405e-49
Identity = 100/155 (64.52%), Postives = 120/155 (77.42%), Query Frame = 1
Query:  265 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            I V+PSILSA+FA LG ++K VE  G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLPLDVHLMI EP++ +P F KAGADI+SVH E  +  HLHRT+  IK+ G KAGVVLNP T +  IE V D  DL L+M+VNPGFGGQ+ I S + K
Sbjct:    2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPK 154          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.990e-41
Identity = 85/159 (53.46%), Postives = 113/159 (71.07%), Query Frame = 1
Query:  253 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +VPN+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+I+S H E S   H+ RT+  I+D G KAG+VLNPAT L  ++  LD  DL L+MSVNPGFGGQ  I   + K
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTLDQLDLVLLMSVNPGFGGQAFIPGVLDK 168          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.656e-40
Identity = 84/159 (52.83%), Postives = 113/159 (71.07%), Query Frame = 1
Query:  253 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +V N+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+++S H E S   H+ RT+  I+D G KAG+VLNPAT LS ++  LD  DL L+MSVNPGFGGQ  I   + K
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTLDKLDLVLLMSVNPGFGGQAFIPGVLDK 168          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_AQUAE (Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.545e-39
Identity = 81/161 (50.31%), Postives = 113/161 (70.19%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKKSQT*EEM 750
            +++PSIL+ ++  +GEQ++A    G D +H DVMDG FVPNIT G  ++  +R    LP+D HLMI  P++ +P F++AGA+ +SVH E  +  H+HRTL  IK+LGAKAGVV+NP TSLSAIE  L   D  L+MSVNPGF GQ+ IE  +++ +  +EM
Sbjct:    3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSLSAIEEALYYADYVLLMSVNPGFSGQKFIERSIERLRILKEM 161          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.749e-37
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  265 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVK 726
            I ++PSILSA+FA  G +++A+E  G DW+HVDVMDG FVPN+T GP  V A R      +DVHLMI   +  +  + +AGAD+++ H E     H+HRTL  I+  G K+GV +NP T   AIE VLD+ D+  +M+VNPGFGGQ+ I+   K
Sbjct:    7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKYIDMTAK 158          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.590e-37
Identity = 78/154 (50.65%), Postives = 107/154 (69.48%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            ++ SILSA+FA+LGE  K    AG DWIH DVMD  +VPN+T+GP+++ ALR     +P+DVHLM+   +  +P F +AGAD ++ H E  ST H+ RTLN IK+ G KAG+ LNPATSL+ ++ V++  DL L+MSVNPGFG Q  + +   K
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNK 157          
The following BLAST results are available for this feature:
BLAST of EY650060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_SPIOL1.214e-9379.46Ribulose-phosphate 3-epimerase, chloroplastic OS=S... [more]
RPE_SOLTU1.484e-9174.26Ribulose-phosphate 3-epimerase, chloroplastic (Fra... [more]
RPE_ORYSJ3.314e-8384.04Ribulose-phosphate 3-epimerase, chloroplastic OS=O... [more]
RPE_SYNY34.079e-5765.87Ribulose-phosphate 3-epimerase OS=Synechocystis sp... [more]
RPE_BACSU1.405e-4964.52Ribulose-phosphate 3-epimerase OS=Bacillus subtili... [more]
RPEC_RALEH6.990e-4153.46Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPEP_RALEH2.656e-4052.83Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_AQUAE8.545e-3950.31Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus... [more]
RPE_RHOCA2.749e-3748.70Ribulose-phosphate 3-epimerase OS=Rhodobacter caps... [more]
RPE_BUCAP3.590e-3750.65Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-G04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650060 ID=EY650060; Name=EY650060; organism=Citrus sinensis; type=EST; length=905bp
AAACGAACGAAAACAGATACCATATTTCCTCTCACTAGCCATAACCAAAC
CAACAGTTACGTTTTATAGAGAGAAACAAAAAAAAGCGTCAAGATGTCTA
CAGGCTCGCTGTGTTCATCAACGACTCATATCAATGGCTTTACAGGTGGT
TTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTTTTAC
AAGGGGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGATAAGT
TCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTC
GCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTG
GATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACAATTG
GACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTTGGAT
GTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTATCAA
GGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACCATTC
ATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGCTGGA
GTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCCTTGA
TGTGGNTGATCTTTGTCTGATCATGTCNGTGAACCCTGGCTTTGGTGGGC
AAAGGCTTATTGAGAGCCAAGTAAAAAAATCTCAGACTTGAGAAGAAATG
TGTTAGAGGAGGGAGTAAACCCATGATTGAATANATGGGGNAGTAGGTCC
NAAAATGCATATANGGTATTGAAGCTGCGCTATGCCNTGGTTGCTGGTCA
NCTGTCTTTGAGCTAAGATATGCTGAACTTTAAGGGATAAACCANCAAAG
CACAG
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