EY650059

Overview
NameEY650059
Unique NameEY650059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650059 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.634e-15
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 2
Query:   77 MGRKFFVGGNWKCIGTTEEVKKIVSVLNEGQVPSSDVAEVHVIPPSVFLVV 229
            MGRKFFVGGNWKC GTT++V+KIV  LNEGQVP SDV EV V PP VFL V
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPV 51          
BLAST of EY650059 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.494e-15
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 2
Query:   77 MGRKFFVGGNWKCIGTTEEVKKIVSVLNEGQVPSSDVAEVHVIPPSVFL 223
            MGRKFFVGGNWKC GT+EEVKKIV++LNE +VPS DV EV V PP VFL
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFL 49          
BLAST of EY650059 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 2
Query:   77 MGRKFFVGGNWKCIGTTEEVKKIVSVLNEGQVPSSDVAEVHVIPPSVFLVV 229
            MGRKFFVGGNWKC GTT++V KIV +LNEGQ+ S+DV EV V PP VFL V
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPV 51          
BLAST of EY650059 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2
Query:   77 MGRKFFVGGNWKCIGTTEEVKKIVSVLNEGQVPSSDVAEVHVIPPSVFL 223
            M RKFFVGGNWKC GT EEVKKIV+ LNE QVPS DV EV V PP VFL
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFL 49          
BLAST of EY650059 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.446e-13
Identity = 36/49 (73.47%), Postives = 38/49 (77.55%), Query Frame = 2
Query:   77 MGRKFFVGGNWKCIGTTEEVKKIVSVLNEGQVPSSDVAEVHVIPPSVFL 223
            MGRKFFVGGNWKC GT EEVKKI++ LN   VPS DV EV V PP VFL
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFL 49          
BLAST of EY650059 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 2
Query:   77 MGRKFFVGGNWKCIGTTEEVKKIVSVLNEGQVPSSDVAEVHVIPPSVFLVV 229
            MGRKFFVGGNWKC GT E+V+ IV  LN GQ+ S DV EV V PP VFL +
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPI 51          
BLAST of EY650059 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 6.073e-12
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 2
Query:   77 MGRKFFVGGNWKCIGTTEEVKKIVSVLNEGQVPSSDVAEVHVIPPSVFL 223
            MGRKFFVGGNWKC GT  +V+ IV+ LN GQ+ S DV EV V PP VFL
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFL 49          
BLAST of EY650059 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 2
Query:   77 MGRKFFVGGNWKCIGTTEEVKKIVSVLNEGQVPSSDVAEVHVIPPSVFL 223
            MGRKFFVGGNWKC GT E V KIV  LNE  + ++DV  V V PP VFL
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFL 49          
The following BLAST results are available for this feature:
BLAST of EY650059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPIS_MAIZE2.634e-1576.47Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_COPJA4.494e-1577.55Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYSJ1.307e-1472.55Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_ARATH1.708e-1477.55Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_PETHY1.446e-1373.47Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_HORVU2.087e-1266.67Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_SECCE6.073e-1267.35Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_STELP6.715e-1165.31Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-G03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650059 ID=EY650059; Name=EY650059; organism=Citrus sinensis; type=EST; length=622bp
TCGGTGCCGGNATTCCAAGCCCCNACCCACGCGTCGCGAGAAATATTTCT
ATAACACACACATTCACTCGTCGACCATGGGCAGGAAGTTCTTCGTCGGC
GGTAACTGGAAATGCATTGGAACAACTGAAGAAGTGAAAAAGATAGTGAG
CGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGCTGAGGTACATG
TTATTCCTCCGTCTGTGTTTCTTGTTGTGGGATGATTTATTTTATGCCTA
TCTTTTTTTTTTGGGGAAGGTTTCTCACGGGACTATCGGGTTCCCTCGCG
CCCGGACAATTAATCCTTAACTTTTCGCCTCTCCATACCCCCGCGTCCAC
TTATTCTCCACTCTCTTCGGCCCCCGCCGCCACGCTGCGCATCGGCCCTG
TTGCGCGCTGGACGCACGGATTGGACTATTTGACGTATCCCCCTTGCTGC
GCAGTGATACTTGTAGCGGCGACATCGTCGTGCCCTACTCTCCTACCCGA
AATCTCCCTCGTTTTAGGGTTTATAATGTCTGTCTATCTAGGCCGATTGG
GTGATTGGTTTTGTCGATGGTCGATGTGTCGGTCGACGCGGCATCGCACA
AGTCTAATCGTCGTTCTTTATG
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