EY650057

Overview
NameEY650057
Unique NameEY650057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.750e-42
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 3
Query:   81 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAG-GAXKKK 389
            TGLFVGLNKGHVVTK+E PPRP++RKGKTSKR  F++NLI+EVAG APYE+RITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS G GA +KK
Sbjct:    4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKK 107          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.750e-42
Identity = 85/110 (77.27%), Postives = 94/110 (85.45%), Query Frame = 3
Query:   60 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAXKKK 389
            M   Q  TGLFVGLNKGHVVT++EL PRP  RKGKTSKR  F++NLI+EVAG APYE+RITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GG   +K
Sbjct:    1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEK 110          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.185e-41
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 3
Query:   81 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGA 377
            TGLFVGLNKGHVVT++EL PRP+ RKGKTSKR  F++ LIREVAG APYE+RITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GGA
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGA 106          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.610e-36
Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 3
Query:   60 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 332
            MAPKQPNTGLFVGLNKGH+VTKKEL PRPSDRKGKTSKR HFV+NLIREVAGF PYE+RITELLKVGKDKRALKV + K+G H +  K+ E
Sbjct:    1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.595e-30
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 3
Query:   93 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 368
            VGLNKGH VTKK   PRPS RKG  S+RV  V+ ++REVAG+APYERR+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+  LRKM++A
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAA 97          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27
Identity = 62/100 (62.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   87 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAXKK 386
            L VGL KGH VTK E  PRPS RKG  SK   FV++LIREV GFAP+ERR  ELLKV KDKRALK  K++LGTH R K+KR+E+SN L   R A    +K
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.986e-26
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 3
Query:   93 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 368
            VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.986e-26
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 3
Query:   93 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 368
            VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.593e-26
Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   84 GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 368
            GL VGLNKG V+TK++LP RPS RKG+ SKR  FV++++REVAGFAPYERR+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++  R A
Sbjct:    4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98          
BLAST of EY650057 vs. ExPASy Swiss-Prot
Match: RL36_BOVIN (60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 3.387e-26
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 3
Query:   93 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 368
            VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A
Sbjct:    9 VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100          
The following BLAST results are available for this feature:
BLAST of EY650057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL363_ARATH5.750e-4282.6960S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL362_ARATH5.750e-4277.2760S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL361_ARATH2.185e-4183.8460S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_DAUCA3.610e-3681.3260S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL36_ENTCP6.595e-3071.7460S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36_IXOSC2.345e-2762.0060S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36_PONAB1.986e-2664.1360S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]
RL36_HUMAN1.986e-2664.1360S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]
RL36A_SCHPO2.593e-2660.0060S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_BOVIN3.387e-2664.1360S ribosomal protein L36 OS=Bos taurus GN=RPL36 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650057 ID=EY650057; Name=EY650057; organism=Citrus sinensis; type=EST; length=631bp
CCATTATAGAAGAAGTTATATATTCCCGGGGGATGGGGGTAGGAGCTGTT
TGGTAGGTGATGGCTCCAAAGCAGCCAAATACTGGCCTTTTTGTGGGTCT
AAACAAAGGACATGTCGTGACCAAGAAGGAGTTGCCTCCCCGCCCTTCTG
ATAGAAAAGGCAAAACTAGTAAGAGAGTCCATTTTGTGAAGAACCTCATT
AGGGAGGTTGCTGGTTTTGCTCCCTATGAAAGGAGGATTACTGAACTTCT
TAAAGTTGGGAAAGATAAGCGTGCTTTGAAGGTGGCAAAGAGAAAGTTGG
GCACTCACAAGAGAGCCAAGAAGAAGCGCGAGGAAATGTCCAATGCTCTA
CGCAAGATGAGGTCGGCTGGAGGTGCANAGAAAAAGAAGTGAAGCCTCAT
TCAAGGGTTCTTTTAGATTCATCAGTGAAAGAATTTTATTTAGCTTTTGT
TCTTCTAATATTGGAATTTTGGTTAGAGTTTTAGACTTGCTTTGAAATGT
TAACTGTACTTTGTTTCCAATGAGAGAGTTCAGTTTTGTTTCCTTTGTCT
GTGAAATTTGAGTATCTTGTTACTCACAGTTGCCAGTTTTTTAATCATCG
ATAAGAATTGATTATCAAAAAAAAAAAAAAA
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