EY650049

Overview
NameEY650049
Unique NameEY650049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650049 vs. ExPASy Swiss-Prot
Match: ODO2_MYCTU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium tuberculosis GN=sucB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.381e-12
Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  166 VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVIFQ 333
            +P +GES+T+GT+ ++LKQ GD VE+DEP+ ++ TDKV  ++ SP AGV+  +I Q
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQ 62          

HSP 2 Score: 24.6386 bits (52), Expect = 3.381e-12
Identity = 20/87 (22.99%), Postives = 32/87 (36.78%), Query Frame = 3
Query:  441 LIAKEGETVEPGAKIAVISKSGEGVXXXXXXXXXXXXXXXXXXXXSAEKQTPESEAAPAVKDKHPLNHLLQPKKPTAPPSKPMASEP 701
            +IA+E +TVE G ++AVI  + +                      + E   P  E  PA + +           P  PP +P +  P
Sbjct:   59 IIAQEDDTVEVGGELAVIGDAKD----------------------AGEAAAPAPEKVPAAQPE-------SKPAPEPPPVQPTSGAP 116          
BLAST of EY650049 vs. ExPASy Swiss-Prot
Match: ODO2_MYCBO (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium bovis GN=sucB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.381e-12
Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  166 VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVIFQ 333
            +P +GES+T+GT+ ++LKQ GD VE+DEP+ ++ TDKV  ++ SP AGV+  +I Q
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQ 62          

HSP 2 Score: 24.6386 bits (52), Expect = 3.381e-12
Identity = 20/87 (22.99%), Postives = 32/87 (36.78%), Query Frame = 3
Query:  441 LIAKEGETVEPGAKIAVISKSGEGVXXXXXXXXXXXXXXXXXXXXSAEKQTPESEAAPAVKDKHPLNHLLQPKKPTAPPSKPMASEP 701
            +IA+E +TVE G ++AVI  + +                      + E   P  E  PA + +           P  PP +P +  P
Sbjct:   59 IIAQEDDTVEVGGELAVIGDAKD----------------------AGEAAAPAPEKVPAAQPE-------SKPAPEPPPVQPTSGAP 116          
BLAST of EY650049 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.570e-11
Identity = 28/54 (51.85%), Postives = 42/54 (77.78%), Query Frame = 1
Query:  166 VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVI 327
            VP + ESIT+GT+A++LKQ GD V+  E I ++ETDKV ++V S +AGV+Q ++
Sbjct:    6 VPELAESITEGTIAEWLKQVGDSVDKGEAIVELETDKVNVEVVSEEAGVLQELL 59          

HSP 2 Score: 26.5646 bits (57), Expect = 3.570e-11
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  441 LIAKEGETVEPGAKIAVISKSGEG 512
            L+A EG+TVE G  IAV+   GEG
Sbjct:   58 LLANEGDTVEVGQAIAVV---GEG 78          
The following BLAST results are available for this feature:
BLAST of EY650049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ODO2_MYCTU3.381e-1250.00Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCBO3.381e-1250.00Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAS13.570e-1151.85Dihydrolipoyllysine-residue succinyltransferase co... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650049 ID=EY650049; Name=EY650049; organism=Citrus sinensis; type=EST; length=925bp
CCACGCGTCCGGCGTGTTCAGCGTTCTAGCTATCACATTTTGTCAGGGAA
TTATGTTTGTTCGACGCCAAGAAGCGAAGTAATTGAGCTGATACAGAAAG
GATCTTTTATTGGATCGAGAAGTAGATTGTTTTCTTCAGATAGTGGAGAC
CTGGTTGATGCTGTTGTTCCCTTCATGGGTGAATCCATTACTGATGGAAC
ATTGGCGAAGTTTTTGAAGCAACCTGGAGATAGAGTTGAAATGGATGAGC
CCATTGCTCAAATTGAAACTGATAAGGTGACAATTGATGTGGCTAGTCCT
CAAGCCGGTGTTATCCAAAACGTAATATTTCAATAACGAAACAATATTTA
AATGACTAGCTTTACTTCTTACTTTCTGAAAATGGACTGAATTCTATTAG
TTTGAATGGTTGTAACAATTTTTAATGTAACTGGTAGTAGCTTATAGCCA
AGGAAGGTGAAACTGTGGAACCAGGTGCAAAGATTGCTGTTATTTCAAAA
TCAGGTGAAGGTGTTGCTCAAGCTGCTTCAGCGGAGAAAGCTGCTGCTCA
GCCTCCACCTGCTGAAGATAAGCCAAGTGCTGAGAAGCAAACTCCTGAGT
CAGAAGCTGCCCCTGCTGTAAAAGATAAACACCCTCTGAACCACCTCCTA
CAGCCAAAAAAACCTACTGCACCACCNTCAAAACCCATGGCTTCAGAACC
CCAGCTTNCTCCAAGGACAGAGAGAGACGGGTNCCTATGACANGACTTAN
GAAAAGGGTCGCTACTCGCTTGAAAGATTCTCAGATACATTTTGCGTGCT
TACACATTGTATGAGGNTGATATGACTAACTTGATGAAGCTCGCTCANAT
ATAAGGATGCTTTNCTTGAAACATGGGGTGAANTGGNNACTATGTCGGAT
TGTCAAGCTGCTGTAGTGCACTCAC
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