EY650044

Overview
NameEY650044
Unique NameEY650044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650044_ssr174 microsatellite EY650044_ssr174:174..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY650044 vs. ExPASy Swiss-Prot
Match: XYLL3_ARATH (D-xylose-proton symporter-like 3 OS=Arabidopsis thaliana GN=At5g59250 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 6.154e-39
Identity = 92/162 (56.79%), Postives = 100/162 (61.73%), Query Frame = 1
Query:  373 LGMTLVPPLALPSHCSRPSLVARTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGNLLGYFCGKLQIMQLGGWAYMYGAXAPLAL 858
            +G T    L+L S    P+L   TWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELII                                  AMHGAPLYIAETCPSQIRGTLISLKELFIVLG LLG+  G  QI  +GGW YMYG   P+AL
Sbjct:  116 IGATSGATLSLQS----PALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVAL 273          
BLAST of EY650044 vs. ExPASy Swiss-Prot
Match: XYLL1_ARATH (D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.673e-29
Identity = 60/142 (42.25%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  424 PSLVARTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGNLLGYFCGKLQIMQLGGWAYMYGAXAP 849
            P+L   +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+                                   MH AP+YIAET PSQIRG +ISLKE   VLG + GY  G L I  + GW YMY    P
Sbjct:   78 PTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATILP 219          

HSP 2 Score: 31.9574 bits (71), Expect = 5.673e-29
Identity = 22/62 (35.48%), Postives = 31/62 (50.00%), Query Frame = 3
Query:  261 SAGG---EDESRISDATNQEAFSWSSVIXXXXXXXXXXXXXXYDIGATSGATISLQSPELSG 437
            S+GG   E E  + +  + E +S  + I              Y+IGATS A +SL+SP LSG
Sbjct:   21 SSGGITAEKEPLLKENHSPENYSVLAAIPPFLFPALGALLFGYEIGATSCAIMSLKSPTLSG 82          
BLAST of EY650044 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.680e-28
Identity = 71/162 (43.83%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  373 LGMTLVPPLALPSHCSRPSLVARTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGNLLGYFCGKLQIMQLGGWAYMYGAXAPLAL 858
            +G T    ++L S    PSL   +W+NLS+V +GLV SGSLYGAL GSI+ ++IAD +GR++ELI+                                  AMH AP+YIAET PS IRG L+SLKE FIVLG + GY  G L +    GW YMY    PLA+
Sbjct:   65 IGATSCATISLQS----PSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAV 222          
The following BLAST results are available for this feature:
BLAST of EY650044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XYLL3_ARATH6.154e-3956.79D-xylose-proton symporter-like 3 OS=Arabidopsis th... [more]
XYLL1_ARATH5.673e-2942.25D-xylose-proton symporter-like 1 OS=Arabidopsis th... [more]
XYLL2_ARATH1.680e-2843.83D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650044 ID=EY650044; Name=EY650044; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGGCTCTGTGATCACTGATTACTCACTCTATCCAATATTCA
TTCATGGCTTTCACTTCCTCAATTGGACCTCCTTTCACTCTCAATCTCCC
ACATTTACACCAACCCACAAGCCAAAAATCTTTCTACTTTAGATGCAAGG
CTAACTCAAACCCATCTTCAAAATCTCTCTCTCCTTTCAAGGCCAACAAT
TTCTTATCTACCAAGCCCTTACTGGTCTCCAAATTCAATGTTGGAGCTCA
GAGAGAATATTCTGCTGGGGGAGAAGATGAGTCGCGTATATCTGACGCAA
CTAATCAAGAGGCTTTTTCTTGGTCTTCTGTGATTTTGCCGTTTTTGTTT
CCAGCTTTGGGAGGATTGTTGTTTGGGTATGACATTGGTGCCACCTCTGG
CGCTACCATCTCATTGCAGTCGCCCGAGCTTAGTGGCACGAACTTGGTTC
AACCTTTCGGCTGTTCAGCTTGGCCTTGTGGTCAGTGGTTCCCTTTATGG
AGCTCTTCTTGGATCCATCCTTGTCTACTCAATTGCAGATTTCCTTGGAA
GAAAGCGGGAGCTTATCATAGCTGCTGTTCTATATGCACTTGGTGCTTTG
ACCACTGCCTATGCTCCTGGCCTTGGTGTTCTTTTAGTGGGACGGCTGCT
CTATGGGCTTGGCATCGGTTTGGCCATGCATGGNGCTCCTCTGTATATTG
CAGAAACTTGCCCATCTCAGATACGTGGAACTCTTATATCTCTAAAGGAG
CTCTTCATAGTTCTGGGAAATTTGTTGGGTTATTTTTGTGGGAAGCTTCA
AATAATGCAGTTGGGGGGGTGGGCGTACATGTATGGGGCTANTGCTCCTC
TTGCTTTGTGATGGATAAGGN
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