EY650041

Overview
NameEY650041
Unique NameEY650041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.836e-67
Identity = 137/226 (60.62%), Postives = 152/226 (67.26%), Query Frame = 3
Query:   39 SLTIPTNLSKPLLKPRSNSQLSHA-KLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLV 713
            SLTIP NL   +L PRSN  L+ +   S     C                   ++AF             P PAVADISGLTPCK+SKQFAKR              YAP+SAPALA+ A +EKTKRRFDNYGKYGLLCGS GLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLAS ++F+GF WPVAA  E L   L+
Sbjct:    2 SLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-------MKAFSAAVALSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLI 217          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.976e-67
Identity = 139/226 (61.50%), Postives = 148/226 (65.49%), Query Frame = 3
Query:   39 SLTIPTNLSKPLL-KPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLV 713
            S TIPTNL KPL  KP+  S  S A  SK +                        A              P  A+ADI+GLTPCKESKQFAKR              YA DSAPALAIKATMEKTK+RFDNYGKYGLLCGS GLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLAS L+F+GFSWPVAA  E L  +LV
Sbjct:    2 SFTIPTNLYKPLATKPKHLSSSSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAALALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.828e-65
Identity = 135/231 (58.44%), Postives = 149/231 (64.50%), Query Frame = 3
Query:   39 SLTIPTNLSKPL--LKPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLVQGTL 725
            S TI T+  +PL     +S+   S +K++   I C                   L A                PA ADISGLTPCKESKQFAKR              YAPDSAPALAIKATMEKTKRRFDNYGK GLLCGS GLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLA+ L+F+GFSWPVAA  E L  +L+  T+
Sbjct:    2 SFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAALALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELIDPTV 232          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.966e-61
Identity = 114/156 (73.08%), Postives = 128/156 (82.05%), Query Frame = 3
Query:  246 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLV 713
            P PA ADI+GLTPCKESK FAKR              YAPDSAPALAI+AT++KTKRRF+NYGK+GLLCGS GLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKKPAM+EIIIDV LA+ ++ +GF WPVAA  E +   LV
Sbjct:   72 PPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 227          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.608e-39
Identity = 88/164 (53.66%), Postives = 104/164 (63.41%), Query Frame = 3
Query:  246 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQR----HWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLVQGTL 725
            P  A+ADI+GLTPC ESK +AK               Y  DSAPA+A+KATME+TK RF NY K GLLCG+ GLPHLI          H GE   P   FLY+AG+IG+VGR YLIA+ GE KP  KEIIIDVPLA+ L ++G  WP+AA  E     L +GTL
Sbjct:   57 PSAAMADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQE-----LQRGTL 215          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.980e-37
Identity = 76/149 (51.01%), Postives = 95/149 (63.76%), Query Frame = 3
Query:  246 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXE 692
            P  A A+++GL PCK+S  F KR              Y  D+ PALA+   +EKTK RF  YG+ GLLCG+ GLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DVPLA   +  GF+WP+AA  E
Sbjct:   15 PIIANAEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQE 163          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.410e-37
Identity = 75/149 (50.34%), Postives = 92/149 (61.74%), Query Frame = 3
Query:  246 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXE 692
            P  + AD++GL PCK SK+F +R              Y P++ P LA++  + KTK RF  YG  GLLCG+ GLPHLI  G   H GEF+ PGL FLYIAGWIGWVGR+Y+   S   KP  KEIIIDVP+A   +  G+ WP AA  E
Sbjct:   17 PVASHADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKE 165          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.676e-36
Identity = 73/144 (50.69%), Postives = 93/144 (64.58%), Query Frame = 3
Query:  261 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXE 692
            A+++GL PCK+S  F KR              Y  ++ PALA+   +EKTK RF  YG+ GLLCG+ GLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DVPLA   +  GF+WP+AA  E
Sbjct:   24 AEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQE 167          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.876e-36
Identity = 77/154 (50.00%), Postives = 95/154 (61.69%), Query Frame = 3
Query:  249 QPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKL 710
            +P  AD++GL PC +S  F +R              Y P SAPA A++  ++KT++RFD Y   GLLCG+ GLPHLI  G   H GEF  PGLLFLYIAG+IGW GRSYL A++       KEIIID+P+A   V KGF WP+AA  E    KL
Sbjct:   21 RPVRADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKL 174          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_GRATL (Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.128e-35
Identity = 75/153 (49.02%), Postives = 93/153 (60.78%), Query Frame = 3
Query:  255 AVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLV 713
            A  + +GLT C+ES  F KR              Y  ++ PA+A++  + KTK RF+ Y K G+LCG+ GLPHLI  G   H GEF+ PG+LFLYI GWIGWVGR YL  IS   KP  KEII+DVPLA      GF+WP+AA  E    +LV
Sbjct:   24 AEVETAGLTKCQESPAFTKRLNNSVKKLETRLAKYDANTPPAIALQTQIIKTKIRFNKYAKSGILCGTDGLPHLITDGRWNHAGEFMIPGVLFLYITGWIGWVGRGYLRDISQTTKPTEKEIILDVPLALKYCLSGFTWPLAAIKELTSGELV 176          
The following BLAST results are available for this feature:
BLAST of EY650041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_ARATH1.836e-6760.62Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL6.976e-6761.50Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR3.828e-6558.44Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU1.966e-6173.08Photosystem I reaction center subunit III, chlorop... [more]
PSAF_CHLRE3.608e-3953.66Photosystem I reaction center subunit III, chlorop... [more]
PSAF_PORYE1.980e-3751.01Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_GUITH4.410e-3750.34Photosystem I reaction center subunit III OS=Guill... [more]
PSAF_PORPU1.676e-3650.69Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_CYAPA4.876e-3650.00Photosystem I reaction center subunit III OS=Cyano... [more]
PSAF_GRATL4.128e-3549.02Photosystem I reaction center subunit III OS=Graci... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650041 ID=EY650041; Name=EY650041; organism=Citrus sinensis; type=EST; length=872bp
CTCACCCTGAAAGAAAAGAAGAAAAGGAAAAAGAAGAGTCTCTGACAATT
CCAACAAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTCTCAGTT
GAGCCATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTTCTGCTG
GTTCTGAAGAGACTTCCTCTTCTTCTGGCAAGGCCGCCAAGCCGCTCCAG
GCTTTCTCAGCAGCCCTTGCGCTTTCCTCAATTCTGCTATCAGCCCCACA
GCCCGCAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGTCCAAAC
AATTCGCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCTTCACTA
AAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAATCAAAGCCACCAT
GGAGAAGACGAAACGGCGGTTTGACAACTACGGGAAGTACGGGTTGCTGT
GCGGGTCANATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAGAGGCAC
TGGGGTGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGCTGGATG
GATCGGGTGGGTTGGCAGGAGCTACTTGATCGCCATTAGCGGTGAAAAGA
AGCCGGCCATGAAGGAGATCATCATTGATGTTCCTTTGGCTTCCANGTTG
GTCTTCAAAGGTTTTAGCTGGCCTGTTGCTGCTACAGNAGAGTCGTTAAT
GGTGAAACTTGTGCAAGGGACGTTATCATNCTATCTATTTCTATCTCCTC
TGGTGATCTCAATTTCTTTGGTGGAATTTTCATTTCCATTTTATTTGTGT
CATGTGGTGGTGCTTACCTGCCCTGTGTATTGAGGGCGGGTGATTATCAT
GGAATATCAATCTGGGAAAAAA
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