EY650039

Overview
NameEY650039
Unique NameEY650039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650039 vs. ExPASy Swiss-Prot
Match: BH047_ARATH (Transcription factor bHLH47 OS=Arabidopsis thaliana GN=BHLH47 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.387e-31
Identity = 80/169 (47.34%), Postives = 104/169 (61.54%), Query Frame = 3 
Query:  198 MGSESSASLDEEVNVMVVDASVDGHCPTKKNKSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIXXXXXXXXXXXXXXQIEVLQSELRARVVQSKPDLNIPP---------EFQQPELSSHFPG 677
            M S++ ++  +E N     A+ D  C     K +VPKR++KA RE+LKREHLN+LF++LA+ +E+NQ N+GKA +L EA R LKD+F QIESL KE+ASLLSES YVT               +I  LQ+E+ AR  QSKPDLN  P         + Q PE  S FPG
Sbjct:    1 MVSKTPSTSSDEAN-----ATADERC----RKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQNSGKASILCEATRFLKDVFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEYHHHHYQQQHPERVSQFPG 160
The following BLAST results are available for this feature:
BLAST of EY650039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BH047_ARATH1.387e-3147.34Transcription factor bHLH47 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650039 ID=EY650039; Name=EY650039; organism=Citrus sinensis; type=EST; length=938bp
CCCGACCCACGCGTCCGATTTTTATTGCTCCCAATTCCTAAACACCTTAT
TAATTTTCTCAAATTCAAGCTTCGATAACTCCTGTTCTTATAAGGTTGTT
TTTTTTTTTTTCTAAAAAAAAAAAAATCAACTTTCATTTTAGCGTTACCC
GAGGATTTTGCACAGGGATTCAAATCTCAAACTCATTTGAGACAGGCATG
GGTTCTGAGTCTTCTGCTTCCTTGGATGAAGAGGTCAACGTCATGGTGGT
GGATGCATCAGTAGATGGGCATTGTCCGACCAAAAAGAATAAGAGCAGAG
TTCCTAAACGAGTTCACAAGGCTGAGAGGGAGAAACTGAAGCGCGAGCAT
TTGAATGATCTCTTTCTTGATCTTGCCAATGCTGTTGAAGTGAATCAGCC
AAACAATGGAAAGGCCTGTGTGTTGAATGAAGCAGCTAGACTATTGAAGG
ACTTGTTTAGCCAGATTGAGTCACTAAATAAGGAGAATGCATCTCTCTTG
TCTGAATCTCACTACGTCACCATTGAGAAGAATGAATTGAAGGAGGAAAA
TTCTTCTCTTGAATCTCAAATTGAAGTTCTGCAAAGCGAACTACGTGCAA
GGGTGGTACAATCTAAACCTGACTTGAATATACCTCCTGAATTTCAGCAA
CCAGAATTGTCTTCACATTTCCCGGGAGATAGCTATGGATTTCCTGCTGC
TGTAGAGCCAACACTATCTCAAGCGCCTGCTGTCCCTTGNTGTCCCCATC
CATTCTGACCTTCAAGCTTATTCAGCATCTGATGTTGCTCAACNACATCT
AAACCGCCTCAAATGTAGCAAACGCATGCTANGTATCCCACCTGCAGATT
CTGGCCTCCNNNACTCTGCGAGAATATTCTATACTAGGAAAATGCTGATG
AAACAATAGCTAAACCCTGACTCCTACCTGNTTTTAGT
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