EY650037

Overview
NameEY650037
Unique NameEY650037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_CITSI (ATP synthase subunit b, chloroplastic OS=Citrus sinensis GN=atpF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.106e-29
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLISWCDQGVTFTSHLGPIWAWLG 681
            ILNSIRNSEELQRGAIERLEKARARLRKIE+EADQ RVNGYSEI R KF +I   YKTLD  ENYK+ETIHFE            F  ALQG L TL S  ++ +    HL  I A +G
Sbjct:   60 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKEL----HLRTISANIG 174          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_POPTR (ATP synthase subunit b, chloroplastic OS=Populus trichocarpa GN=atpF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.160e-26
Identity = 69/119 (57.98%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLISWCDQGVTFTSHLGPIWAWLG 681
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQ RVNGYSEI R K  +I   YKTL+  ENYK+ETIHFE            F  ALQG L TL S     +T   HL  I A +G
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSC----LTNELHLRTISANIG 174          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_POPAL (ATP synthase subunit b, chloroplastic OS=Populus alba GN=atpF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.160e-26
Identity = 69/119 (57.98%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLISWCDQGVTFTSHLGPIWAWLG 681
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQ RVNGYSEI R K  +I   YKTL+  ENYK+ETIHFE            F  ALQG L TL S     +T   HL  I A +G
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSC----LTNELHLRTISANIG 174          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_LACSA (ATP synthase subunit b, chloroplastic OS=Lactuca sativa GN=atpF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.554e-25
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLISWCDQGVTFTSHLGPIWAWLGGVEGINRIS 708
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQ RVNGYSEI R K  +I   YKTL+  ENYK+ETI+FE            F  ALQG L TL S  +  +    HL  I A +G +  +  I+
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLIDSTYKTLEQLENYKNETINFEQQKASNQVRQRVFQQALQGALGTLNSCLNSEL----HLRTISANIGILGAMKEIT 183          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_HELAN (ATP synthase subunit b, chloroplastic OS=Helianthus annuus GN=atpF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.554e-25
Identity = 68/128 (53.12%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLISWCDQGVTFTSHLGPIWAWLGGVEGINRIS 708
            ILN+IRNSEEL+ GAIE+LEKARARLRKIE+EAD+ RVNGYSEI R K  +I   YKTL+  ENYK+ETI+FE            F  ALQG L TL S  +  +    HL  I A +G +  + +I+
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKIEIEADEFRVNGYSEIEREKLNLIDSTYKTLEQLENYKNETINFEQQKASNQVRQRVFQQALQGALGTLNSCLNNEL----HLRTISANIGILAAMKQIT 183          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_MANES (ATP synthase subunit b, chloroplastic OS=Manihot esculenta GN=atpF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.641e-25
Identity = 69/128 (53.91%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLISWCDQGVTFTSHLGPIWAWLGGVEGINRIS 708
            IL++IRNSE+L+ GAIE+LEKARARLRK+E+EADQ R NGYSEI R K  +I   YKTL+  ENYK+ETIHFE            F  ALQG L TL S     +T   HL  I A LG    I  I+
Sbjct:   60 ILDTIRNSEKLREGAIEQLEKARARLRKVEIEADQFRTNGYSEIEREKLNLINSTYKTLEQLENYKNETIHFEQQRTINQVRQRVFQQALQGALGTLNSC----LTNELHLRTINANLGMFGAIKEIT 183          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_GUIAB (ATP synthase subunit b, chloroplastic OS=Guizotia abyssinica GN=atpF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.641e-25
Identity = 67/128 (52.34%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLISWCDQGVTFTSHLGPIWAWLGGVEGINRIS 708
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EAD+ RVNGYSEI R K  +I   YKTL+  ENYK+ETI+FE            F  ALQG L TL S  +  +    HL  I A +G +  + +I+
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEIEADEFRVNGYSEIEREKLNLIDSTYKTLEQLENYKNETINFEQQKASNQVRQRVFQQALQGALGTLNSCLNNEL----HLRTISANIGILAAMKQIT 183          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_PANGI (ATP synthase subunit b, chloroplastic OS=Panax ginseng GN=atpF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.061e-25
Identity = 62/97 (63.92%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTL 615
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQ RVNGYSEI R K+  I    KTLD  ENYK+ETIHFE            F  ALQG L TL
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKWNFINSTSKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTL 156          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_GOSHI (ATP synthase subunit b, chloroplastic OS=Gossypium hirsutum GN=atpF PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.350e-24
Identity = 62/99 (62.63%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            ILN+IRNSEEL+ GAIERLEKARARLRK+E+EADQ RVNGYSEI R K  +I   YK L+  ENYK+ETI+FE            F  ALQG L TL S
Sbjct:   60 ILNTIRNSEELRGGAIERLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTYKILEQLENYKNETIYFEQQRAINQVRQRVFQQALQGALGTLNS 158          
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_GOSBA (ATP synthase subunit b, chloroplastic OS=Gossypium barbadense GN=atpF PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.350e-24
Identity = 62/99 (62.63%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            ILN+IRNSEEL+ GAIERLEKARARLRK+E+EADQ RVNGYSEI R K  +I   YK L+  ENYK+ETI+FE            F  ALQG L TL S
Sbjct:   60 ILNTIRNSEELRGGAIERLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTYKILEQLENYKNETIYFEQQRAINQVRQRVFQQALQGALGTLNS 158          
The following BLAST results are available for this feature:
BLAST of EY650037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ATPF_CITSI3.106e-2963.03ATP synthase subunit b, chloroplastic OS=Citrus si... [more]
ATPF_POPTR7.160e-2657.98ATP synthase subunit b, chloroplastic OS=Populus t... [more]
ATPF_POPAL7.160e-2657.98ATP synthase subunit b, chloroplastic OS=Populus a... [more]
ATPF_LACSA3.554e-2553.13ATP synthase subunit b, chloroplastic OS=Lactuca s... [more]
ATPF_HELAN3.554e-2553.13ATP synthase subunit b, chloroplastic OS=Helianthu... [more]
ATPF_MANES4.641e-2553.91ATP synthase subunit b, chloroplastic OS=Manihot e... [more]
ATPF_GUIAB4.641e-2552.34ATP synthase subunit b, chloroplastic OS=Guizotia ... [more]
ATPF_PANGI6.061e-2563.92ATP synthase subunit b, chloroplastic OS=Panax gin... [more]
ATPF_GOSHI1.350e-2462.63ATP synthase subunit b, chloroplastic OS=Gossypium... [more]
ATPF_GOSBA1.350e-2462.63ATP synthase subunit b, chloroplastic OS=Gossypium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650037 ID=EY650037; Name=EY650037; organism=Citrus sinensis; type=EST; length=822bp
ATAAAAAAATAAACAACTTTGCTGACAATTATATATTTTGATTCGGTCAG
AAGAGTCCTCCGAATATTCTGTTCTTGGATTATGGATCAGTCGCAAGATT
CATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAGGCTCATTACAT
TAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGTTGACGTAATTGA
GTGGGAGAGCCAAATGAATCGAAAAATTCATGTTTGGTTCGGGAAGGGAT
CATCGAAGTTTTGAGATGAATGGAAAGATAATCTACTTTCATTAAGTGAT
TTATTAGATAATCGCAAACTGAGGATTCTGAATAGTATTCGAAATTCAGA
AGAACTGCAGAGAGGGGCCATTGAACGGCTGGAAAAAGCCCGGGCCCGGC
TACGAAAAATAGAAGTAGAAGCAGATCAGGTTCGAGTGAATGGATACTCT
GAGATAGCACGACATAAATTCATTGTGATTAAGTTCGCTTATAAGACTTT
GGATGCATCAGAAAATTACAAAGATGAAACCATTCATTTTGAACAACAAA
GAGCAGTTAATCAAGTCCGACAACGGGTTTTTCCAACAGCTTTACAAGGA
GGGCTCCGCACTCTGATTAGCTGGTGTGACCAGGGAGTGACTTTTACGTC
CCATTTGGGGCCCATATGGGCGTGGTTGGGAGGCGTGGAAGGAATAAACC
GGATTAGTCCTTTTGACTGGGAACGAGTTGAGGGCTTTTTGTGCTGGTGG
AGGAGGACAAGGGTGGTGCAACTCCGTGTGGCCGCCACGTACGGCCCGCG
AGGGTGGTTTGAGTGTCCCGCA
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