EY650029

Overview
NameEY650029
Unique NameEY650029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 7.474e-80
Identity = 141/221 (63.80%), Postives = 166/221 (75.11%), Query Frame = 3
Query:    3 LNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            +N++D+LQ++  A +  +  +   NG      P   I+CG G+N++FV  EV PWSKT                  HRVMT++PRYDQYKDAWDT VV+E+KVGD IE VRFFHC+KRGVDRVFVDHP FL KVWGKT+SKIYGP  G DYQDNQLRFSLLCQAALEAPR+LNL S+KYFSGPYGEDV FVANDWHT+L+PCYLK+MY+ KGMY  AKV F
Sbjct:   45 INMVDKLQMRNNAKQSRSLVKKTDNG-----SPLGKIICGTGMNLVFVLAEVGPWSKTGGLGDVVGGLPPAMAGNGHRVMTVSPRYDQYKDAWDTSVVVEIKVGDSIETVRFFHCYKRGVDRVFVDHPIFLEKVWGKTKSKIYGPNAGTDYQDNQLRFSLLCQAALEAPRVLNLTSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSKGMYLHAKVAF 260          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.079e-78
Identity = 141/221 (63.80%), Postives = 165/221 (74.66%), Query Frame = 3
Query:    3 LNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            LN +D+LQ+KT  SK      A  NG      P+  I+CG G+N++FVG EV PWSKT                  HRVMT++PRYDQYKDAWDT V +E+K+GD+IE VRFFH +KRGVDRVFVDHP FL KVWGKT SKIYGPR G DYQDNQLRFSLLC AALEAPR+LNLNS+K FSGPYGE+V F+ANDWHT+L+PCYLK +Y+P G+YK AKV F
Sbjct:   46 LNTMDKLQMKTQ-SKAVKKVSATGNG-----RPAAKIICGHGMNLIFVGAEVGPWSKTGGLGDVLGGLPPAMAARGHRVMTVSPRYDQYKDAWDTSVSVEIKIGDRIETVRFFHSYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPRAGLDYQDNQLRFSLLCLAALEAPRVLNLNSSKNFSGPYGEEVAFIANDWHTALLPCYLKAIYQPMGIYKHAKVAF 260          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.404e-78
Identity = 141/221 (63.80%), Postives = 166/221 (75.11%), Query Frame = 3
Query:    3 LNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            +N +D LQ +T      T + A R   + + G S  IVCG G+N++FVGTEV PWSKT                  HRVMTI+PRYDQYKDAWDT V +E+KVGD IE VRFFHC+KRGVDRVFVDHP FL KVWGKT SKIYGP+ G DY DN+LRFSLLCQAALEAP++LNLNS+ YFSGPYGEDV F+ANDWHT+LIPCYLK+MY+ +G+Y +AKV F
Sbjct:   42 VNKLDGLQSRTNTK--VTPKMASRTETK-RPGCSATIVCGKGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAARGHRVMTISPRYDQYKDAWDTSVAVEVKVGDSIEIVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPKAGLDYLDNELRFSLLCQAALEAPKVLNLNSSNYFSGPYGEDVLFIANDWHTALIPCYLKSMYQSRGIYLNAKVAF 259          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 5.922e-77
Identity = 133/185 (71.89%), Postives = 154/185 (83.24%), Query Frame = 3
Query:  111 IVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            IVCG+ L  +FVG EV PWSKT                  HRVMT++PRYDQYKDAWDT+V++E+KVGDKIE VRFFHC+KRGVDRVFVDHP FL +VWGKT SK+YGP+TG DY+DNQLRFSLLCQAALEAPR+LNLNS+KYFSGPYGEDV FVANDWH++LIPCYLK+MYK +G+YK+AKV F
Sbjct:   73 IVCGMSL--VFVGAEVGPWSKTGGLGDVLGGLPPVLAGNGHRVMTVSPRYDQYKDAWDTNVLVEVKVGDKIETVRFFHCYKRGVDRVFVDHPLFLERVWGKTGSKLYGPKTGIDYRDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVIFVANDWHSALIPCYLKSMYKSRGLYKNAKVAF 255          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.010e-76
Identity = 139/220 (63.18%), Postives = 168/220 (76.36%), Query Frame = 3
Query:    6 NIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            N++D LQ ++ A K  +++ + R+      G    IVC  G++++F+G EV PWSKT                  HRVMTI PRYDQYKDAWDT VV+++KVGDK+E VRFFHC+KRGVDRVFVDHP FLAKV GKT SKIYGP TG DY DNQLRFSLLCQAALEAP++LNLNS+KYFSGPYGEDV FVANDWHT+L+PCYLK+MY+ +G+Y +AKVVF
Sbjct:   47 NMVDNLQRRSQA-KPVSAKSSKRSSKVKTAGK---IVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGPITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVF 262          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 6.548e-76
Identity = 139/223 (62.33%), Postives = 166/223 (74.44%), Query Frame = 3
Query:    3 LNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSL-MIVCGV-GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            +N ID LQ++T A K        +NG  ++ G +   IVC   G+N++FVG EV PW KT                  HRVMT+ PRYDQYKDAWDT VV+EL+VGD+IE VRFFH +KRGVDRVFVDHP FL KVWGKT S +YGP+ G+DY+DNQLRFSLLCQAALEAPR+LNLNS+ YFSGPYGEDV FVANDWHT+L+PCYLKTMY+ +G+Y +AKV F
Sbjct:   44 VNKIDMLQLRTSAKK------PSKNGRENEGGMAAGTIVCKQQGMNLVFVGCEVGPWCKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVELQVGDRIEPVRFFHSYKRGVDRVFVDHPMFLEKVWGKTGSMLYGPKAGKDYKDNQLRFSLLCQAALEAPRVLNLNSSNYFSGPYGEDVVFVANDWHTALLPCYLKTMYQSRGIYMNAKVAF 260          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.004e-74
Identity = 129/217 (59.45%), Postives = 153/217 (70.51%), Query Frame = 3
Query:   15 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            D L ++T A      + A R G R    PSL++    G+N++FVG E+APWSKT                  HRVM ++PRYDQYKDAWDT VV E+K+GD  E VRFFHC+KRGVDRVF+DHP FL +VWGKT+ KIYGP  G DY+DNQLRFSLLCQAALEAPRIL+LN+N YFSGPYGEDV FV NDWHT  + CYLK+ Y+  G+YK AK  F
Sbjct:   44 DALSMRTSACPAPRQQPAARRGGRGGRFPSLVVCATAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYKRGVDRVFIDHPLFLERVWGKTEEKIYGPDAGTDYKDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSCYLKSNYQSNGIYKDAKTAF 260          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.783e-73
Identity = 130/210 (61.90%), Postives = 158/210 (75.24%), Query Frame = 3
Query:   36 MASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            +A + AT+ +  RN  R+    S  IVC  G+ I+FV TEV PW KT                  HRVMTIAPRYDQYKD WDT+V++E+ VGD+ E VRFFHC+KRGVDRVFVDHP FL KVWGKT SK+YGP TG D++DNQLRF LLC AALEAPR+LNLN+++YFSGPYGE+V FVANDWHT+++PCYLK+MYK  G+Y++AKV F
Sbjct:   11 LAKRRATNYETHRNSSRT----SSPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKVAF 216          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.575e-72
Identity = 129/217 (59.45%), Postives = 153/217 (70.51%), Query Frame = 3
Query:   15 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            D L ++T A      +Q  R G R    PSL++    G+N++FVG E+APWSKT                  HRVM ++PRYDQYKDAWDT VV E+K+GD  E VRFFHC+KRGVDRVFVDHP FL +VWGKT+ KIYGP  G DY+DNQLRFSLLCQAALEAPRIL+LN+N YFSGPYGEDV FV NDWHT  + CYLK+ Y+  G+Y+ AK  F
Sbjct:   42 DTLSMRTSARAAPRHQQQARRGGRF---PSLVVCASAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYKRGVDRVFVDHPLFLERVWGKTEEKIYGPVAGTDYRDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSCYLKSNYQSHGIYRDAKTAF 255          
BLAST of EY650029 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 8.283e-71
Identity = 128/217 (58.99%), Postives = 157/217 (72.35%), Query Frame = 3
Query:   21 LQVKTMASKLAT--SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVXFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 665
            L ++T+ +  A   SR+A R   R  +   ++   G G+N++FVG E+APWSKT                  HRVM ++PRYDQYKDAWDT V+ E+KV D+ E+VRFFHC+KRGVDRVF+DHPWFL KV GKT+ KIYGP  G DY+DNQ RFSLLCQAALEAPRILNLN+N YFSGPYGEDV FV NDWHT L+ CYLK+ Y+  G+Y++AKV F
Sbjct:   40 LGMRTIGASAAPKQSRKAHRGSRRCLS--VVVSATGSGMNLVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVISEIKVADEYERVRFFHCYKRGVDRVFIDHPWFLEKVRGKTKEKIYGPDAGTDYEDNQQRFSLLCQAALEAPRILNLNNNPYFSGPYGEDVVFVCNDWHTGLLACYLKSNYQSNGIYRTAKVAF 254          
The following BLAST results are available for this feature:
BLAST of EY650029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SSG1_ANTMA7.474e-8063.80Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES1.079e-7863.80Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU2.404e-7863.80Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA5.922e-7771.89Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH1.010e-7663.18Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_IPOBA6.548e-7662.33Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI8.004e-7459.45Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU1.783e-7361.90Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_MAIZE2.575e-7259.45Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU8.283e-7158.99Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-D06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650029 ID=EY650029; Name=EY650029; organism=Citrus sinensis; type=EST; length=893bp
GTTTAAATATCATAGACGAACTCCAAGTGAAAACAATGGCATCAAAACTA
GCCACCAGCAGGCAAGCTGGGAGGAATGGATTTAGAAGCCAGAACGGGCC
ATCCTTAATGATTGTTTGTGGGGTTGGCCTGAATATCCTCTTTGTTGGAA
CAGAGGTTGCTCCTTGGAGTAAAACTGGGGGACTTGGTGATGTTCTTGGA
GGTCTGCCACCAGCACTGGCCGCCAATGGGCACCGTGTCATGACGATTGC
ACCCCGATATGACCAGTACAAAGATGCTTGGGATACTGATGTTGTAATTG
AGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCGCTTCTTTCATTGCCAC
AAGAGAGGAGTTGATCGGGTGTTTGTGGATCATCCTTGGTTTCTTGCGAA
GGTGTGGGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGG
ACTACCAGGACAACCAACTTCGCTTCAGCTTGTTGTGCCAGGCAGCTCTT
GAAGCACCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACC
ATATGGTGAAGATGTCGNTTTTGTTGCTAATGACTGGCATACTTCCCTTA
TCCCTTGTTACCTGAAAACTATGTATAAGCCCAAAGGGATGTACAAAAGT
GCCAAAGTTGTTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTG
CATTTGAGGATTTTGGACTTCTCAACCTNCAGCTCAATTAAAAGCTCTTT
TGACTTTATTGATGGATACATAAACCTGTGAGAAGAAGAAAATCAACTGA
TGAAGCTGGATATTAAATCAGACATGGTCTAACTGTGAGCCACACTATGC
CAGAACTNGNTTCTGGTGAGACAAAGATANAATTGGTACATCT
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