EY649989

Overview
NameEY649989
Unique NameEY649989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_EUCGG (50S ribosomal protein L23, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.381e-27
Identity = 67/93 (72.04%), Postives = 71/93 (76.34%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYTFNVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVKAMNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_COFAR (50S ribosomal protein L23, chloroplastic OS=Coffea arabica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.381e-27
Identity = 67/93 (72.04%), Postives = 71/93 (76.34%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYTFNVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_CITSI (50S ribosomal protein L23, chloroplastic OS=Citrus sinensis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.077e-27
Identity = 67/93 (72.04%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSHQLPRKG +MG     T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_VITVI (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-26
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_DAUCA (50S ribosomal protein L23, chloroplastic OS=Daucus carota GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-26
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGQTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_CUCSA (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-26
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_SINAL (50S ribosomal protein L23, chloroplastic OS=Sinapis alba GN=rpl23 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.527e-26
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYTFNVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_FRAAN (50S ribosomal protein L23, chloroplastic OS=Fragaria ananassa GN=rpl23 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.527e-26
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPTMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_ARATH (50S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.527e-26
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYTFNVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PANGI (50S ribosomal protein L23, chloroplastic OS=Panax ginseng GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.605e-26
Identity = 65/93 (69.89%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP +G +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGRGRRMGPIMGQTMHYRRMIITLQ-PGYSIPPLRKKR 92          
The following BLAST results are available for this feature:
BLAST of EY649989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RK23_EUCGG1.381e-2772.0450S ribosomal protein L23, chloroplastic OS=Eucaly... [more]
RK23_COFAR1.381e-2772.0450S ribosomal protein L23, chloroplastic OS=Coffea... [more]
RK23_CITSI3.077e-2772.0450S ribosomal protein L23, chloroplastic OS=Citrus... [more]
RK23_VITVI1.169e-2670.9750S ribosomal protein L23, chloroplastic OS=Vitis ... [more]
RK23_DAUCA1.169e-2670.9750S ribosomal protein L23, chloroplastic OS=Daucus... [more]
RK23_CUCSA1.169e-2670.9750S ribosomal protein L23, chloroplastic OS=Cucumi... [more]
RK23_SINAL1.527e-2670.9750S ribosomal protein L23, chloroplastic OS=Sinapi... [more]
RK23_FRAAN1.527e-2670.9750S ribosomal protein L23, chloroplastic OS=Fragar... [more]
RK23_ARATH1.527e-2670.9750S ribosomal protein L23, chloroplastic OS=Arabid... [more]
RK23_PANGI2.605e-2669.8950S ribosomal protein L23, chloroplastic OS=Panax ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649989 ID=EY649989; Name=EY649989; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGCCCACGCGTCCGGGTTAAAGCGCCCAACTCATAATTGGC
GAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAA
TAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACA
TAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAAC
TAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATCGATTTATGG
ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGA
AAAAATCAATATACTTTTAATGTCGAATCAGGATTAACTANGACAGAAAT
AAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGGTATNGCTATGAATA
GTCATCAACTTCCCCGAAAGGGTANNAAGATGGGGACCTATNATGGCACA
TACCATGCATTACAGACGTATGATCATTTACGCTCACCGGGGTATTCTAT
TNCANNCTCTANAAAGAAAAGAAACTGAATCAAATACTAATAGCATGGCG
ATACATTTATACCAAACTTCTACCCCGAGCACACGCATGGAGCCCGAGAC
AGTCAAGTGAAATCCAATCACGAAATAATTTGATCTATGACAGCATCGTT
GTGGGAAAAGTCGTAATGCCAGAGAATCATACCGCAGGCATAGAGGGGGN
AGTCATAAGCGTCTATACGTAAATCGATTTCGACGGATGAAAAGACTATA
TGGTAGATCGTACCATAGATACGACCCTATCGAATGCTACATTTGCTATC
CTTGGGGGATGGGGAGAGAGATTATTTACTCCCANAGGGCTATATGAATA
CCATGT
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