EY649943

Overview
NameEY649943
Unique NameEY649943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.600e-37
Identity = 83/155 (53.55%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  186 NANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR 647
            +   K+L +MK+R+ E+E EA  LR MQ +++ E         T A + +KE +D++S+YVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V NALLLN + LH R LKV+ KRTN+PGM + RGR       RGR
Sbjct:    8 DTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGR 153          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.744e-33
Identity = 78/181 (43.09%), Postives = 111/181 (61.33%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM------------------------KQFRGRRPNTFGFRGRMPFIA 662
            +LE +K R+KE+EEEA  +++MQ++V+K+M  G+    ++   +  EK+E+D+RS+YVGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NET   GRQ+KV +KRTN PG+                          FRG R    G+RGR  + A
Sbjct:   43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYA 223          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.278e-33
Identity = 74/159 (46.54%), Postives = 106/159 (66.67%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRMPFIAWC 668
            +LE +K R+KE+EEEA  +++MQ++V+K+M  G+    ++   +  EK+E+D+RS+YVGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NET   GRQ+KV +KRTN PG+         +F  RG     A C
Sbjct:   43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACC 201          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.250e-31
Identity = 76/162 (46.91%), Postives = 103/162 (63.58%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM---------KQFRGRRPNTFGFRGR 647
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSR 275          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.250e-31
Identity = 71/137 (51.82%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 599
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.632e-31
Identity = 76/162 (46.91%), Postives = 103/162 (63.58%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 647
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.632e-31
Identity = 76/162 (46.91%), Postives = 103/162 (63.58%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 647
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.632e-31
Identity = 71/137 (51.82%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 599
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  108 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 244          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.750e-31
Identity = 70/137 (51.09%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 599
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
BLAST of EY649943 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.958e-30
Identity = 70/156 (44.87%), Postives = 98/156 (62.82%), Query Frame = 3
Query:  201 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQD-------SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRG 644
            +LE+MKKR +E+EEEA  L E+Q  +E  +                     ++EE+DSRS+YVGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  YVEFV  +++ NA+ LN++  + RQLK++ KRTN+P   +     P   GFRG
Sbjct:   43 ELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRG 198          
The following BLAST results are available for this feature:
BLAST of EY649943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PAB2_SCHPO2.600e-3753.55Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PABP2_DROPS1.744e-3343.09Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
PABP2_DROME2.278e-3346.54Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PABP2_MOUSE1.250e-3146.91Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PAB2A_XENLA1.250e-3151.82Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PABP2_HUMAN1.632e-3146.91Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN1.632e-3146.91Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2B_XENLA1.632e-3151.82Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR4.750e-3151.09Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_DICDI8.958e-3044.87Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649943 ID=EY649943; Name=EY649943; organism=Citrus sinensis; type=EST; length=876bp
GCCACACAAGAAAATATTTAGAAAATTATAAAATGGAGCAACACGATGAG
CAAGAGCACGACGTTTACGGCGGTGAAATCCCCGACGAGATGGACGCCGA
CATCGACGTCGACGAACACGAACACGAACACGACCAAGACCACGAACACG
AACACGATGCCGACAATGAAAATGAAGAAGACCCGAACGCTAACTCCAAG
GACTTGGAGGATATGAAGAAGAGGCTGAAGGAGATTGAAGAGGAAGCCGG
CGCGCTCCGTGAAATGCAGGCTAAAGTCGAGAAGGAGATGGGCGCCGTCC
AAGATTCCTCGAGTACTTCTGCAACTCAAGCTGAAAAGGAGGAGGTGGAC
TCCCGATCAATCTATGTTGGCAATGTAGACTATGCATGCACTCCTGAGGA
AGTGCAGCAGCATTTTCAATCTTGTGGAACGGTTAACAGAGTGACGATTT
TGACAGACAAGTTTGGTCAACCAAAAGGATTTGCTTATGTTGAGTTTGTT
GAAATTGATGCTGTTCAGAATGCTCTTTTGTTAAATGAAACAGAGCTCCA
TGGTCGACAATTGAAGGTCTCTGCTAAGCGAACCAACATTCCTGGTATGA
AACAATTCCGAGGAAGGCGACCCAACACGTTTGGTTTCCGAGGTCGAATG
CCATTCATTGCCTGGTGTTCCTTTTGTTCCTATGGAATGATTCCAAGGTT
CAGACGACCCATGAGGTACAGGCCATACTAATGGTGGTATCTCATGTTAG
TCTTGGTCCAAATTCTTCTAGACAGTCGTGTATTATATCTGTATGTGGGG
GAGAAAAAGCATTTTATCATAGGGCATGTGGAAGCAACTGGCTCTTNCTG
GAGGGCTTGCTGCAGCAGTNATGATT
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