EY649933

Overview
NameEY649933
Unique NameEY649933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649933 vs. ExPASy Swiss-Prot
Match: COG5_HUMAN (Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.520e-25
Identity = 86/256 (33.59%), Postives = 129/256 (50.39%), Query Frame = 2
Query:   74 IYGVACDSFTSLFQAMIDGLESCILQIHDQNFS-VLGMDAAMDNNASPYMEELQKCILHFRSEFLSMLLPSSANTTTAGTETICTMLVRSMASRVLIFFIRHASLVRPLSESWKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLGASPLLQD-LPPRVILHHLYSRGPDELQSPLQRNKATPLQYSLWAGFSGGGSHMER---Y*ATLDDYAAKVRAGENKS-STLYILYAQLGSPLMRRL 823
            I+ +  ++   L  ++ D +E+ I+ +H ++FS  L      D   S YM+ELQ  I    S++         +     TE I        A R +  FIRHASL+RPL E  K+R+A D A++ELAVG     V  LG  YR LR+FRPL+F  +  + +SP L D +P  +I+  L++R P EL+SP QR + +  ++S W       S  +R       L+ Y   VR+ E K  + +Y +  QL    M  L
Sbjct:  595 IHALMENAVQPLLTSVGDAIEAIIITMHQEDFSGSLSSSGKPDVPCSLYMKELQGFIARVMSDYFKHF--ECLDFVFDNTEAI--------AQRAVELFIRHASLIRPLGEGGKMRLAADFAQMELAVGPFCRRVSDLGKSYRMLRSFRPLLFQASEHVASSPALGDVIPFSIIIQFLFTRAPAELKSPFQRAEWSHTRFSQW--LDDHPSEKDRLLLIRGALEAYVQSVRSREGKEFAPVYPIMVQLLQKAMSAL 838          
BLAST of EY649933 vs. ExPASy Swiss-Prot
Match: COG5_MOUSE (Conserved oligomeric Golgi complex subunit 5 OS=Mus musculus GN=Cog5 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.292e-25
Identity = 84/272 (30.88%), Postives = 137/272 (50.37%), Query Frame = 2
Query:    2 TRMSSMITGLPPIAAEVLSPSLGTIYGVACDSFTSLFQAMIDGLESCILQIHDQNFSVLGMDAAM-DNNASPYMEELQKCILHFRSEFLSMLLPSSANTTTAGTETICTMLVRSMASRVLIFFIRHASLVRPLSESWKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLGASPLLQDLPP-RVILHHLYSRGPDELQSPLQRNKATPLQYSLWAGFSGGGSHMER---Y*ATLDDYAAKVRAGENKS-STLYILYAQL 799
            T++ +  +     A + +  +L TI+ +  ++   L  ++ D +E+ I+ +H ++FS     +   D   S YM+ELQ  I    +++         +     TE I        A R +  FIR+ASL+RPL E  KLR+A D A++ELAVG     V  LG  YR LR+FRPL+F  +  +  SP + D+ P  +I+  L++R P EL+SP QR + +  ++S W       S  +R       L+ Y   VR+ + K  + +Y +  QL
Sbjct:  561 TKVVASQSSFSATAEQTIMSALKTIHDLMGNAIQPLLTSVADAIEAIIITMHQEDFSGASSSSGKPDVPCSLYMKELQGFIARVMNDYFKHF--ECMDFVFDNTEAI--------AQRAIELFIRNASLIRPLGEGGKLRLAADFAQMELAVGPLCRRVSDLGKSYRMLRSFRPLLFQTSEHVADSPAVGDIIPFSIIIQFLFTRAPAELKSPFQRAEWSHARFSQW--LDDHPSEKDRLLLLRGALEAYVQSVRSRDGKEFAPVYPIMVQL 820          
The following BLAST results are available for this feature:
BLAST of EY649933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COG5_HUMAN2.520e-2533.59Conserved oligomeric Golgi complex subunit 5 OS=Ho... [more]
COG5_MOUSE3.292e-2530.88Conserved oligomeric Golgi complex subunit 5 OS=Mu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649933 ID=EY649933; Name=EY649933; organism=Citrus sinensis; type=EST; length=935bp
TACACGCATGTCATCGATGATAACAGGACTGCCTCCAATTGCAGCAGAAG
TGTTGTCTCCCTCTCTTGGGACAATATACGGAGTTGCATGTGACTCATTT
ACATCCTTGTTCCAAGCAATGATTGACGGTCTTGAGTCTTGCATCTTGCA
AATTCATGACCAGAACTTCAGTGTGCTTGGGATGGATGCTGCCATGGATA
ATAATGCTTCGCCATACATGGAGGAGCTGCAGAAGTGTATTCTTCACTTC
CGTAGTGAGTTTCTATCTATGCTGTTGCCTTCTTCAGCAAATACTACCAC
TGCAGGGACAGAAACTATATGCACTATGCTAGTTCGGAGCATGGCTTCCC
GGGTCCTGATATTTTTCATCAGGCATGCTTCTCTTGTAAGACCGTTGTCA
GAATCATGGAAATTGAGGATGGCCAGAGACATGGCTGAGCTAGAGTTAGC
TGTGGGCCAGAACTTGTTCCCGGTTGAACAACTTGGCGCTCCCTATCGAG
CCCTTCGAGCATTCCGGCCTCTTATTTTCTTGGAAACATCTCAGTTGGGA
GCATCTCCTCTTCTTCAAGATCTTCCACCAAGGGTTATACTTCACCATCT
TTACTCTCGGGGTCCTGATGAATTGCAGTCACCGTTGCAGAGGAATAAAG
CTACACCTCTGCAGTATTCATTGTGGGCTGGATTCTCAGGGGGAGGATCA
CATATGGAAAGGTATTAAGCTACTCTGGATGATTATGCTGCAAAAGTTAG
GGCAGGAGAGAACAAGAGTTCAACCCTGTATATCCTCTATGCTCAACTGG
GATCACCTTTGATGAGAAGGCTCCTGGATTCTAAAATCTTGATACTGGCT
TAATCCTGGAACCAATTGATTCCGAGATGATAGCCTTTGCAATAGGCGAT
TTTGCTTAAGCAAGATGGGAATTTTTCGACCGGAT
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