EY649874

Overview
NameEY649874
Unique NameEY649874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649874_ssr5 microsatellite EY649874_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.381e-68
Identity = 154/257 (59.92%), Postives = 167/257 (64.98%), Query Frame = 3
Query:  111 MPSHPNFPFSLPRWIIELFRSKKVXXXXXXXXXXXXXXXXXXPISN--------HNFECYACTQVGVPVFHSTSCDQAHQPEWEASAGSSLVPIQARSKILGPKDGR--PASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAP-CLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYVRSLKDFGSTFS*FSPXLKLCFG*WVPQL*R-XKIRMI 845
            MPSHPNF F   RWI  LF  K                      S+         + ECYACTQVGVP FHSTSCDQAH PEW ASAGSSLVPIQ  S +  P   R       F  V DPRSKRVQR NRA LLARGM+LAVDPLFFYALSIGR   P CLYMDGA AA+VTVLRTC+DAVHL+H+WLQFRLAYVSRESLVVGC KLVWDPRAIASHY RSL  F        P  +  F   VP+L R  K+++I
Sbjct:    1 MPSHPNFIF---RWI-GLFSDKFRRQTTGIDENSNLQINGGDSSSSGSDETPVLSSVECYACTQVGVPAFHSTSCDQAHAPEWRASAGSSLVPIQEGS-VPNPARTRFRRLKGPFGEVLDPRSKRVQRWNRALLLARGMALAVDPLFFYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAVHLWHVWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYARSLTGFWFDVIVILPVPQAVFWLVVPKLIREEKVKLI 252          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.051e-18
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  399 DGRPASATFAH-VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYVRS 743
            DG   S  + H + DP S  V   N  FL+   ++L +DP +FY   +G  G  CL +D +LAA VT  RT  D  HL H++++FR A+V+R S V G  +LV D R IA  Y+++
Sbjct:   28 DGSQFSVLWRHQILDPDSNIVTYWNHVFLITSILALFLDPFYFYVPYVG--GPACLSIDISLAATVTFFRTVADIFHLLHIFMKFRTAFVARSSRVFGRGELVMDSREIAMRYLKT 141          

HSP 2 Score: 29.6462 bits (65), Expect = 3.051e-18
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  728 SLRAVSQRFWXDVFVILPVPQAVFWLVGP 814
            ++R +   F  DV  +LP+PQ V WLV P
Sbjct:  135 AMRYLKTDFLIDVAAMLPLPQLVIWLVIP 163          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.201e-16
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 3
Query:  285 VPVFHSTSCDQAHQPEWEASAGSSLVPIQARSKILGPKDGR----PASATFAH--VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCG-APCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYVRS 743
            VP+F ST+     Q          ++P ++++++  P+ GR    P +       + DP    V + NR FL    ++L VDPLFF+  S+ R G + C+  D  L  ++T  RT  D  ++ H+ ++FR AYVSR S V G  +LV DP+ IA  Y+RS
Sbjct:   26 VPLFKSTTAPFMKQ---------EVLPKKSKTRLKIPRFGRFKVFPENFEIERDKILDPGGDAVLQWNRVFLFWCLVALYVDPLFFFLSSVKRIGRSSCMTTDLKLGIVITFFRTLADLFYVLHIVIKFRTAYVSRTSRVFGRGELVKDPKLIARRYLRS 176          

HSP 2 Score: 25.409 bits (54), Expect = 1.201e-16
Identity = 11/29 (37.93%), Postives = 15/29 (51.72%), Query Frame = 2
Query:  734 RAVSQRFWXDVFVILPVPQAVFWLVGPPI 820
            R +   F  D+   LP+PQ V W + P I
Sbjct:  172 RYLRSDFIVDLIACLPLPQIVSWFILPSI 200          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.202e-16
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  432 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLA 659
            + DPRSK V+  N+ FLL     L VDPLF Y LS+      CL +DG LA  VT LR+  D +HL+++W+QF++A
Sbjct:   79 ILDPRSKWVREWNKVFLLVCATGLFVDPLFLYTLSVSDT-CMCLLVDGWLALTVTALRSMTDLLHLWNIWIQFKIA 153          

HSP 2 Score: 34.6538 bits (78), Expect = 1.202e-16
Identity = 13/25 (52.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  752 FWXDVFVILPVPQAVFWLVGPPIIE 826
            F+ D+FVILP+PQ V W+V P +++
Sbjct:  189 FFFDLFVILPLPQVVLWVVIPSLLK 213          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.269e-15
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 3
Query:  432 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYVR 740
            +FDP+ K +   N+ F+ +  ++++VDPLF Y   I    A C+ +D  LA IVT +RT +D+ +LFH+ L+FR AYV+  S V G  +LV DP  IA  Y++
Sbjct:  103 IFDPQDKFLLLCNKLFVASCILAVSVDPLFLYLPFIND-KAKCVGIDRKLAIIVTTIRTVIDSFYLFHMALRFRTAYVAPSSRVFGRGELVIDPAQIAKRYLQ 204          

HSP 2 Score: 26.1794 bits (56), Expect = 1.269e-15
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  734 RAVSQRFWXDVFVILPVPQAVFW 802
            R + Q F  D+  +LPVPQ + W
Sbjct:  201 RYLQQYFIIDLLSVLPVPQIIVW 223          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.270e-15
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  432 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYV 737
            +FDP+ K +   NR F+++  ++++VDPLFFY   +   G+ C+ +D  LA   T LRT VD  +L  + LQFR AY++  S V G  +LV DP  IA  Y+
Sbjct:   90 IFDPQDKTLLVWNRLFVISCILAVSVDPLFFYLPIVDNSGSSCIGIDTKLAVTTTTLRTIVDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYL 191          

HSP 2 Score: 22.7126 bits (47), Expect = 1.270e-15
Identity = 8/23 (34.78%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  734 RAVSQRFWXDVFVILPVPQAVFW 802
            R +++ F  D   +LP+PQ   W
Sbjct:  189 RYLTRYFVVDFLAVLPLPQIAVW 211          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.788e-15
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  393 PKDGRPASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYVRS 743
            P     +S T  ++ +P+   +Q  N+ FL A  ++LA+DPLFFY + I      CL +D  L    ++LRT +DA ++ H+  QFR AY++  S V G  +LV D +AIA  Y+ S
Sbjct:   55 PDHKETSSVTRKNIINPQDSFLQNWNKIFLFACVVALAIDPLFFY-IPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSS 170          

HSP 2 Score: 24.2534 bits (51), Expect = 2.788e-15
Identity = 12/31 (38.71%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  728 SLRAVSQRFWXDVFVILPVPQAVFWLVGPPI 820
            +L+ +S  F  D+  ILP+PQ V   V P +
Sbjct:  164 ALKYLSSYFIIDLLSILPLPQIVVLAVIPSV 194          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.790e-15
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  396 KDGRPASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYVRS 743
            +D   ++ T  ++ +P+   +Q  N+ FL A  ++LA+DPLFFY + I      CL +   L    +VLRT +DA ++ H+  QFR AY+S  S V G  +LV DP+AIA  Y+ S
Sbjct:   56 RDSNSSTTTQKNIINPQGSFLQNWNKIFLFASVIALAIDPLFFY-IPIVDGERHCLNLHRNLEIAASVLRTFIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSS 170          

HSP 2 Score: 23.0978 bits (48), Expect = 2.790e-15
Identity = 11/31 (35.48%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  728 SLRAVSQRFWXDVFVILPVPQAVFWLVGPPI 820
            +++ +S  F  D+  ILP+PQ V   V P +
Sbjct:  164 AIKYLSSYFIIDLLSILPLPQLVVLAVIPNV 194          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.113e-15
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  432 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYVR 740
            +FDP+ K +   N+ F+ +  ++++VDPLF Y L   +    C+ +D  LA I T LRT +DA +LFH+ L+FR A+V+  S V G  +LV DP  IA  Y++
Sbjct:  103 IFDPQDKFLLLCNKLFVTSCILAVSVDPLFLY-LPFVKDNEKCIGIDRKLAIIATTLRTVIDAFYLFHMALRFRTAFVAPSSRVFGRGELVIDPAQIAKRYLQ 204          

HSP 2 Score: 24.6386 bits (52), Expect = 6.113e-15
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  734 RAVSQRFWXDVFVILPVPQAVFW 802
            R + Q F  D   +LP+PQ V W
Sbjct:  201 RYLQQYFIIDFLSVLPLPQIVVW 223          
BLAST of EY649874 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.339e-14
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  432 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRCGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCRKLVWDPRAIASHYVR 740
            + +P +K VQ   + F L+  +++ +DPLFF+ + +      C+ +D  +      +R+  D +   ++ LQFRLAYV+RES VVG  +LV  P+ IA HY++
Sbjct:  192 IMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNK-CIMIDWPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAGQLVSHPKKIALHYLK 293          

HSP 2 Score: 27.335 bits (59), Expect = 1.339e-14
Identity = 8/30 (26.67%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  722 RFSLRAVSQRFWXDVFVILPVPQ-AVFWLV 808
            + +L  +  +F+ D+F+++P+PQ  + W++
Sbjct:  286 KIALHYLKGKFFLDLFIVMPLPQILILWII 315          
The following BLAST results are available for this feature:
BLAST of EY649874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CNGC2_ARATH1.381e-6859.92Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG18_ARATH3.051e-1840.52Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNG14_ARATH1.201e-1634.38Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNGC4_ARATH1.202e-1647.37Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNGC6_ARATH1.269e-1541.75Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC7_ARATH1.270e-1541.18Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG10_ARATH2.788e-1537.61Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG13_ARATH2.790e-1538.79Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC9_ARATH6.113e-1540.78Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG20_ARATH1.339e-1434.95Probable cyclic nucleotide-gated ion channel 20, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-E05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649874 ID=EY649874; Name=EY649874; organism=Citrus sinensis; type=EST; length=917bp
CTGGTTGATTGATTGATTGAATTCAATTGGCCATTGTGCACCATCGTCGA
CCAGTACCAGCACCAACACCAGCGCCTCCTTTCTCCTCCCATGGTTACTC
CCTCATCACCATGCCCTCTCACCCCAACTTCCCCTTCTCCCTGCCAAGGT
GGATTATCGAACTGTTTCGAAGCAAGAAAGTTGATGGCGATCAAAATGGC
GAAAACAACAACGACGGCAACAGCGACGACAACAATCCAATATCAAACCA
CAACTTTGAATGCTATGCATGCACTCAAGTAGGGGTTCCGGTCTTTCACT
CCACCAGCTGCGACCAAGCCCACCAGCCCGAATGGGAGGCCTCTGCCGGG
TCCTCCCTCGTCCCCATTCAGGCCCGTAGTAAGATCCTCGGCCCCAAGGA
CGGCCGTCCTGCCTCAGCCACCTTCGCTCATGTGTTCGATCCTCGCAGCA
AGCGCGTGCAGAGACTCAACCGCGCGTTCCTCCTCGCACGTGGCATGTCT
TTGGCTGTGGACCCTTTGTTCTTCTATGCGCTGTCCATCGGCCGATGCGG
CGCCCCGTGTTTGTACATGGACGGTGCCTTGGCGGCGATTGTAACCGTTC
TTCGCACGTGCGTTGACGCCGTCCATTTGTTTCACTTGTGGCTTCAGTTC
AGGCTGGCGTACGTCTCGAGGGAGTCGCTTGTTGTCGGATGCCGCAAGCT
CGTGTGGGACCCACGTGCCATCGCTTCTCATTACGTGCGGTCTCTCAAAG
ATTTTGGNTCGACGTTTTCGTAATTCTCCCCGTNCCTCAAGCTGTGTTTT
GGCTAGTGGGTCCCCCAATTATAGAGAANAAAGATTAGGATGATATGACC
ATCCTTTAATAATCTNCTGGTCCATNCCTTCTAAGTGTANACAGCATCTA
CTTATGAGAGAATGCAA
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