EY649865

Overview
NameEY649865
Unique NameEY649865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649865_ssr39 microsatellite EY649865_ssr39:39..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649865 vs. ExPASy Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.067e-20
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  195 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPAACSQSSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAGDLAEHHEVCGNRTELCHLCNRYIRLRERYNH 572
            D+ T++C +C + IP  N  +H  HC RN+  C +C +  P+   E H    H    C + ++ +E+ +L  H+  +CP R+  C  C+  L    L EH + CG RTELC  C R + +++   H
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTH 131          
BLAST of EY649865 vs. ExPASy Swiss-Prot
Match: XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.129e-19
Identity = 49/161 (30.43%), Postives = 74/161 (45.96%), Query Frame = 3
Query:  210 ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPAACSQSSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAGDLAEHHEVCGNRTELCHLCNRYIRLRERYNHESKRTGVPDNTVGSYRNVRAAESDQGAHRMRAPTPPNEXY 692
            +C +C R + S+N  LH A+C R L  C  C + VP++  EEH    H    C+   ++M++  L  HK  +C +R V C FC+  +    L  H   CG+RTELC  C ++I  R    H           +G    + A E +   H      P N+ +
Sbjct:    7 VCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQGCGQFIMHRMLAQHRDVCRS-EQAQLGKGERISAPEREIYCHYCNQMIPENKYF 166          
BLAST of EY649865 vs. ExPASy Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.129e-19
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  195 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPAACSQSSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAGDLAEHHEVCGNRTELCHLCNRYIRLRERYNH 572
            D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H    C + ++ +E+ +L  H+  +CP R+  C  C+  L    L EH + CG RTELC  C R + +++   H
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTH 131          
BLAST of EY649865 vs. ExPASy Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.285e-19
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 3
Query:  192 SDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPAACSQSSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAGDLAEHHEVCGNRTELCHLCNRYIRLRERYNH 572
            +D+ T++C +C + IP  N  +H  HC RN+  C VC +  P+   E H    H    C + ++ +E+  L  H+  +CP R+  C  C+  L    L +H + CG RTELC  C R + +++   H
Sbjct:    6 NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTC-KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVLVKDLKTH 131          
BLAST of EY649865 vs. ExPASy Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.603e-19
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 3
Query:  195 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPAACSQSSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAGDLAEHHEVCGNRTELCHLCNRYIRLRERYNH--------ESKRT 587
            D+ +++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H    C + ++ +E+  L  H   +CP R+  C  C+  L    L EH + CG RTELC  C R + ++E   H        E KRT
Sbjct:    7 DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTC-KCNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELKTHPEVCGRVEEEKRT 144          
BLAST of EY649865 vs. ExPASy Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.317e-19
Identity = 41/126 (32.54%), Postives = 63/126 (50.00%), Query Frame = 3
Query:  195 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPAACSQSSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAGDLAEHHEVCGNRTELCHLCNRYIRLRERYNH 572
            D+  ++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H    C + ++ +E+  L  H   +CP R+  C  C+  L    L EH + CG RTELC  C R + ++E   H
Sbjct:    7 DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTC-KCNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELQTH 131          
BLAST of EY649865 vs. ExPASy Swiss-Prot
Match: XAF1_BOVIN (XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 48/166 (28.92%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  207 KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPAACSQSSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAG--DLAEHHEVCGNRTELCHLCNRYIRLR--ERYNHESKRTGVPDNTVGSYRNVRAAESDQGAHRMRAPTPPNEXY 692
            ++C +C R + S+++ LH AHC   L  C  C + V +   EEH    H    C+   +++ +  L  H+ ++C +R V C FC+  +     DL EHH  CG +TELC  C +++ LR   R+  E +R  +    +   +++   ES+   H      P N+ +
Sbjct:    6 QVCRNCKRRVASNHLGLHEAHCLMYLVLCPECKEPVLQHEMEEHCQGGHQQVGCAMCQQSVPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEHH--CGQQTELCPDCGQHVMLRVLARHREECQREQL---RLQKGKSIPVPESNICCHYCNQMIPGNKYF 166          
The following BLAST results are available for this feature:
BLAST of EY649865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TRAD1_MACFA5.067e-2032.54TRAF-type zinc finger domain-containing protein 1 ... [more]
XAF1_HUMAN1.129e-1930.43XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 P... [more]
TRAD1_HUMAN1.129e-1932.54TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_BOVIN3.285e-1932.28TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_MOUSE5.603e-1932.37TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_RAT7.317e-1932.54TRAF-type zinc finger domain-containing protein 1 ... [more]
XAF1_BOVIN1.993e-1628.92XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-D07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649865 ID=EY649865; Name=EY649865; organism=Citrus sinensis; type=EST; length=890bp
AGCCTTTCTTCCCAATTTAAAAAAAAAAAAAACCCTTCTTATTTTATTTT
ATTTTCCCCCTAATTTTCTGAGAAATCCATAAAACAGCATCTAGCGAGAA
CAAGACTGCGACATCACACAAACTTCTTCTATCTCTCCCTAAAAAGAGCT
ACGACGGCGAATTGATTGATCGTATCGCGATGGCAATGACTTCTGATGAA
ACCACAAAAATATGCAGTCACTGTGACAGAGCTATACCGTCTTCAAATAT
TGATTTGCATTTTGCACATTGCTCGCGGAATCTGGAACGATGTAAAGTAT
GTGGCGACATGGTTCCAAGGAAATATGCTGAGGAGCACTTCTTAAATACC
CATGCCCCGGCGGCCTGTTCACAGAGCAGCGAGACAATGGAGCGTGAAAT
TTTAGCCATCCATAAAGGTGAAAAGTGCCCGCAAAGGATTGTCACTTGCG
ACTTTTGTGAGTTTCCACTGCCTGCAGGTGATCTGGCCGAGCATCACGAA
GTCTGTGGGAATCGCACAGAACTTTGTCATCTGTGTAACAGATATATTAG
GTTGCGAGAAAGATATAACCATGAAAGTAAGCGCACAGGTGTCCCAGACA
ACACTGTGGGATCTTACAGGAATGTAAGGGCAGCTGAAAGTGACCAAGGA
GCTCACAGAATGCGCGCACCCACGCCGCCAAACGAGTTNTATCGGATACG
ATGTCTACTTACCATATCAATAACAGGCATCGCTGCTCTATTAGGATCCT
CTTTATTCCCGAGAAGGAAGAGACTACTCAAGTGCATGACCAGCAGAACT
AGAGATAAACACTGTAGGAGTATATATTTCGGTGGCAAACCAATGTATCC
ATTGATCTGCACCTAGACATCTAAAGCATGCTCTGTGTGA
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