EY649864

Overview
NameEY649864
Unique NameEY649864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6943 contig Csv1_Contig6943:1..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY649864 vs. ExPASy Swiss-Prot
Match: C3H38_ARATH (Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana GN=At3g18640 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.069e-23
Identity = 71/157 (45.22%), Postives = 86/157 (54.78%), Query Frame = 3 
Query:  105 QKSNADGKPNGGLENHKVSEINGEVEAEEGRKA-----QAENKVPQ-ENGEVQXXXXXXXXXXXXXXXXXXXTKGLRAFKFALAEFVKELLKPTWKEGQINKDAYXXXXXXXXXXXXGTMQGAANIPQTQEKIDQYLSFSKSKLTKLVQAYVEKSRK 557
            Q+ + D K NG  +  + S+       EEG+K       AEN V + E+G+                      KG+RAFKFAL E VKELLKP WKEG++NKD Y            GTMQ + N+PQTQEKID YLS SK KLTKLVQAYV K +K
Sbjct:  534 QEVSLDPKENGDKKTDEASK------EEEGKKTGEDTNDAENVVDEDEDGD--------DDGSDEENKKEKDPKGMRAFKFALVEVVKELLKPAWKEGKLNKDGYKNIVKKVAEKVTGTMQ-SGNVPQTQEKIDHYLSASKPKLTKLVQAYVGKIKK 675
[Close]
BLAST of EY649864 vs. ExPASy Swiss-Prot
Match: C3H55_ORYSJ (Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 3 
Query:  303 TKGLRAFKFALAEFVKELLKPTWKEGQINKDAYXXXXXXXXXXXXGTMQGAANIPQTQEKIDQYLSFSKSKLTKLVQAYVEKSRK 557
            +K L+ FK ALA+FVK+ LKPTWKEGQ++++ +             T++   N PQT+EKID Y+S+S+ KL KLVQAYV K  K
Sbjct:  875 SKALKMFKLALADFVKDALKPTWKEGQMSREVHKTIVKKVVDKVTTTVE---NTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAK 956
The following BLAST results are available for this feature:
BLAST of EY649864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H38_ARATH9.069e-2345.22Zinc finger CCCH domain-containing protein 38 OS=A... [more]
C3H55_ORYSJ3.124e-1549.41Zinc finger CCCH domain-containing protein 55 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-D06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649864 ID=EY649864; Name=EY649864; organism=Citrus sinensis; type=EST; length=794bp
CACANAACCTTAACCAGAGCCAGTATGATCCTTTGCCTGATAGCATTGAT
CCCAAGCAGCTTGAACTTGTCAGCCCCCCAGGGTTTTCAATAAATCCTAC
TGGACAGAAAAGCAATGCAGACGGAAAACCAAATGGTGGTCTAGAAAATC
ACAAGGTCAGTGAGATCAATGGTGAAGTGGAAGCTGAGGAAGGTAGAAAA
GCCCAAGCAGAGAATAAGGTTCCACAAGAAAATGGTGAGGTGCAGAAAAC
AGATGGAGATGACAAGGATGACAAGGCTGACGAGGGCAAGAAAAGCAAGG
ATACTAAGGGCCTTCGAGCATTTAAATTTGCGCTGGCAGAGTTTGTTAAG
GAGCTTCTAAAACCAACATGGAAAGAAGGTCAAATTAACAAAGATGCTTA
CAAAAACATAGTGAAGAAAGTAGTGGACAAGGTTATTGGTACGATGCAGG
GGGCTGCTAATATTCCTCAAACACAGGAGAAGATTGATCAGTATTTGTCA
TTTTCGAAATCTAAGCTTACCAAACTTGTTCAGGCTTATGTGGAAAAATC
ACGGAAGGGCTGAATGAAGCATGTATCTTTTAATGGTCATAGTTAAAAAT
TTTCCTGATTCTGACAAGCTGTCATGGTGCTTATTGAGCTTATATGTATC
TGCAGCTTCTGCAAATGCAATTTGACCTTNCCTTTATGTATTTTAGTTTT
TCTTAACATGGGGTGCTTTCTTTTTAAACTCATACATGTAGATAAGACTG
TTTTCTATTTGATCTTGGCACATACTTATAAAAAAAAAAAAAAA
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