EY702856

Overview
NameEY702856
Unique NameEY702856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 4.019e-33
Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R LHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++ DMA LGI+ESF+VK+ VLLS  +A
Sbjct:  388 RSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEA 510          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 142.124 bits (357), Expect = 4.019e-33
Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R LHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++ DMA LGI+ESF+VK+ VLLS  +A
Sbjct:  388 RSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEA 510          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 141.739 bits (356), Expect = 5.249e-33
Identity = 71/123 (57.72%), Postives = 95/123 (77.24%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R LHDALCVL+QTV D R ++GGG  EM+MA  V +LA +TPGK++ A+E+F++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++ DMA LGI+ESF+VK+ VLLS  +A
Sbjct:  388 RSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGHITAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEA 510          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 8.953e-33
Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R LHDALCVL+QTV D R ++GGG  EM+MA  V  LA +TPGK++ A+E+F++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  GS+ DMA LGI+ESF+VK+ VLLS  +A
Sbjct:  388 RSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTMLASRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGRITAGLDMKEGSIGDMAVLGITESFQVKRQVLLSAAEA 510          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 8.953e-33
Identity = 70/123 (56.91%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R LHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++ DM+ LGI+ESF+VK+ VLLS  +A
Sbjct:  388 RSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEA 510          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.521e-29
Identity = 66/123 (53.66%), Postives = 91/123 (73.98%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R +HDALCVL+ TV ++R + G G  EM+M+K VDELA  TPGKK+ AIE+F++AL  IPT IA+NAG DS+EL++QL+A H +    AG+++  G + +  ELG+ ESFKVKQ VL+S  +A
Sbjct:  387 RSIHDALCVLAVTVAETRTVLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAKALRQIPTIIANNAGYDSSELVSQLKAAHHQGDKKAGLNMRDGCIGNAEELGVIESFKVKQQVLVSAHEA 509          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.133e-27
Identity = 63/123 (51.22%), Postives = 90/123 (73.17%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R LHDAL VLSQT  ++R + GGG  EMVM+K VD  A+   GKKS A+EAF+RAL  +PT +ADNAG DS+EL+++LR+        +G+D+ +G++ DM +LGI ES+K+K+AV+ S ++A
Sbjct:  382 RSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEA 504          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.479e-27
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDACR 475
            R +HDAL VLSQTV +SRV  GGG  EM+MAK V+E A   PGKK+ A+ AF++AL  +PT +ADNAG DS+EL+AQL+A H       G+D+  G + DM   GI E+ K+KQAV+ S ++  +
Sbjct:  384 RAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQ 508          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.817e-24
Identity = 58/123 (47.15%), Postives = 80/123 (65.04%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R LHDALCVL   V +S+ + G G  E++M+  +   A+K  GK++ A+EAF RAL  +PT I DNAGLDSAEL+ +LRAEH       GID+  G V D+ +LG+ ES+ VK  ++ S  +A
Sbjct:  382 RSLHDALCVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGRALAQLPTIICDNAGLDSAELVTRLRAEHANGRHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEA 504          
BLAST of EY702856 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.609e-21
Identity = 51/123 (41.46%), Postives = 80/123 (65.04%), Query Frame = 2
Query:  101 RPLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE*CPAGIDVISGSVRDMAELGISESFKVKQAVLLSTTDA 469
            R + DA+ V++  + D +V+ GGG PE+ +A+++ + A    G++  A+EAF+ AL  IP T+A+N+GLD  +++ QLRA+H+     AGIDV  G V+DM E G+ E  +VK   L S T+A
Sbjct:  391 RAIEDAIGVVAAALEDGKVVAGGGAPEVEVARQLRDFADGVEGREQLAVEAFADALEIIPRTLAENSGLDPIDVLVQLRAKHEDGQVTAGIDVYDGDVKDMLEEGVVEPLRVKTQALASATEA 513          
The following BLAST results are available for this feature:
BLAST of EY702856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TCPB_MACFA4.019e-3357.72T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN4.019e-3357.72T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_MOUSE5.249e-3357.72T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_RAT8.953e-3358.54T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_BOVIN8.953e-3356.91T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPB_DICDI3.521e-2953.66T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPB_YEAST1.133e-2751.22T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPB_SCHPO1.479e-2751.20Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPB_CAEEL5.817e-2447.15T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
THS_METKA4.609e-2141.46Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-013-A11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702856 ID=EY702856; Name=EY702856; organism=Citrus sinensis; type=EST; length=893bp
GGCCCGGGGGGGGGGGGGGGGGGACCCGCCACACCCACTCTCAACTCTCC
TTTTAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACG
CGTCCGCTGCATGATGCCTTGTGTGTGCTGTCTCAGACAGTCAATGACAG
CAGGGTTTTGTTTGGAGGTGGATGGCCTGAGATGGTTATGGCCAAGGAAG
TGGATGAGCTGGCACGTAAGACTCCTGGGAAAAAGTCCCATGCCATTGAG
GCTTTCTCACGGGCACTTGTTGCCATTCCAACAACCATTGCTGACAATGC
TGGTCTAGACAGTGCTGAGTTGATAGCTCAGCTCCGTGCAGAGCACCAGA
AGGAATGATGCCCTGCAGGCATTGACGTTATCTCTGGATCTGTAAGAGAT
ATGGCTGAGTTGGGGATTTCTGAATCATTCAAAGTTAAGCAGGCTGTACT
GCTTTCAACAACTGATGCCTGCCGAGATGATTCTCATAGTTGATGAAATA
ATCCACTTGTTCGCTCTAGGAGAAGAGAATATATGATGTTTATATATCAT
GTCATATTGTTTGGCTGGTGGACAACATTTTTGGCAGTAAACAAACTATT
CTGCCATCTTCTTACAAACAATTACTCGCTATTCTTTAATGTTGGGATTT
CCATGTGTTTTATTTTGCTCAACATTAAATCTTGTTGGCTCGCTATTATT
TTTGCCTTAAAAGCATTGTAAGTCCCCTGGACTGCGCACGGCCGAAAGCG
TCCTAACCTCCCCCCCACTATAATAATTGATTTTTTACTTTTGTTGGTAA
CCCTGGTAACTATAAACATACATATACTATAATTTTAATATTATAAAAGG
GCCCCCCCTTTAAACACACCATGCTCCCCTAAGTCGCGCCTCC
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