EY702835

Overview
NameEY702835
Unique NameEY702835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702835_ssr421 microsatellite EY702835_ssr421:421..432. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.273e-47
Identity = 114/220 (51.82%), Postives = 134/220 (60.91%), Query Frame = 1
Query:   82 MASTQCFLHHHALFITPARTSSSQRHVANIKATEI-VCRAHNQA-VQEDDGSAVSRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEAS----DRPPY*FLSVLTELLRGMNG 723
            MAST CFLHHHAL    AR+SSS R  A  K+ ++ VCRA  Q   QE++G  VSRRL LT LIGAAA+GSKVSP DA YGE+ANVFGKPK+N D LPY+GDG +++IPSKWNPS+EREFPGQ  RYED+F          +P  +      G P    S         Q         GG DPDA A ANILEA+    +   Y F+SVLT    G  G
Sbjct:    1 MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYL-LGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEG 218          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 8.418e-45
Identity = 110/221 (49.77%), Postives = 131/221 (59.28%), Query Frame = 1
Query:   82 MASTQCFLHHHALFITPARTSSS---QRHVANIKATEIVCRAHNQAVQEDDGSAVSRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEASDR----PPY*FLSVLTELLRGMNG 723
            MA + CFLH  AL  + AR+SSS   QRHV+  K  +I+C+A  Q   EDD SAVSRRL LT L+GAAAVGSKVSP DA YGE+ANVFGKPKTN D LPYNGDG +V +P+KWNPS+E E+PGQ  R+ED+F           P  +      G P    S         Q         GG D +A A ANILE+S +     PY +LSVLT    G  G
Sbjct:    1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKA--QQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYL-LGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEG 218          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.216e-43
Identity = 109/224 (48.66%), Postives = 133/224 (59.38%), Query Frame = 1
Query:   82 MASTQCFLHHHALFITPARTSSS---QRHVANIKATEIVCRAHNQAV-QEDDGSAV--SRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEASDR----PPY*FLSVLTELLRGMNG 723
            MASTQCFLH HAL  + ART+SS   QR+V+++K  ++VCRA  Q+  QEDDG++V  SRRL LT LIGAAA+GSKVSP DA YGE+ANVFGKPK N D L YNGDG ++ +P+KWNPS+E EFPGQ  RYED+F      +    P  +      G P    +         Q         GG +  A A AN+LE S        Y  LSVLT    G  G
Sbjct:    1 MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSRRLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFL-LGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEG 223          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.292e-42
Identity = 106/222 (47.75%), Postives = 129/222 (58.11%), Query Frame = 1
Query:   82 MASTQCFLHHHALFITPARTSSSQRHVANIKATEI-VCRAHNQAVQEDDGS---AVSRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEASDR----PPY*FLSVLTELLRGMNG 723
            MASTQCFLHHHAL  TPART   +  V ++K  ++ VCRA  Q+  ++D     +VSRRL LT LIGAAAVGSKVSP DA YGE+ANVFGKPKT+ D   YNGDG ++ IPSKWNP++E E+PGQ  R+ED+F      +    P  +      G P    S         Q         GG + DA A AN+LE S       PY +LSVLT    G  G
Sbjct:    1 MASTQCFLHHHALS-TPARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYL-LGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEG 220          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.670e-42
Identity = 106/223 (47.53%), Postives = 128/223 (57.40%), Query Frame = 1
Query:   82 MASTQCFLHHHALFITPA--RTSSSQRHVA-NIKATEIVCRAHNQAVQEDD--GSAVSRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEAS----DRPPY*FLSVLTELLRGMNG 723
            MAST CFLHHHA   +PA  R S++QR+ A +IK  +IVC+A  Q   E +   S VSRRL LT LIGAAAVGSKVSP DA YGE+ANVFGKPK N + +PYNGDG ++ +PSKWNPS+E+EFPGQ  RYED+F           P  +      G P    S         Q         GG D    A AN+LE+S    D   Y  ++VLT    G  G
Sbjct:    1 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYL-LGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEG 222          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.535e-41
Identity = 107/223 (47.98%), Postives = 133/223 (59.64%), Query Frame = 1
Query:   82 MASTQCFLHHHALFITPARTSSSQRHVANIKATEI-VCRAHNQ--AVQEDDGSAVS--RRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEASDR----PPY*FLSVLTELLRGMNG 723
            MASTQCFLHHHAL  TPARTS  +  V ++K+ ++ VCRA N+  A Q+D+ ++VS  RRL LT LIGAAAVGSKVSP DA YGE+ANVFGKPKT+ D   YNGDG ++ IPSKWNP++E E+PGQ  R+ED+F      +    P  +      G P    S         Q         GG + DA A AN+LE S        Y +LS+LT    G  G
Sbjct:    1 MASTQCFLHHHALS-TPARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYL-LGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEG 221          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.310e-41
Identity = 105/218 (48.17%), Postives = 125/218 (57.34%), Query Frame = 1
Query:   85 ASTQCFLH-HHALFITPARTSSSQRHVANIKATEIVCRAHNQAVQEDDGSAVSRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEASDR----PPY*FLSVLTELLRGMNG 723
            ASTQCFLH +HAL  +PARTSS    V + K  +++CRA  Q    +  +AVSRRL LT LIG AA+GSKVSP DA YGE+ANVFGKPK N D LPYNGDG ++ IP+KWNPS+E EFPGQ  RYED+F      +    P  +      G P    S         Q         GG +  A A AN+LEAS        Y +LSVLT    G  G
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYL-LGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEG 215          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.643e-40
Identity = 106/218 (48.62%), Postives = 120/218 (55.05%), Query Frame = 1
Query:   82 MASTQCFLHHHALFITPARTSSSQRHVANIKATEIVCRAHNQAVQEDDGSAVSRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEAS----DRPPY*FLSVLTELLRGMNG 723
            MASTQCFLHH     TP RT S QR V   K   IVC+A  Q    D  + VSRRL L+ LIGAAAVGSKVSP DA YGE+ANVFGK KTN D LPYNGDG ++ +P+KWNPS+EREFPGQ  RYED+F              +      G P    S         Q         GG D +A A ANILE+S        Y  +SVLT    G  G
Sbjct:    1 MASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSVLIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYL-LGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEG 214          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.391e-39
Identity = 105/220 (47.73%), Postives = 126/220 (57.27%), Query Frame = 1
Query:   85 ASTQCFLH-HHALFITPARTSSSQRHVANIKATEIVCRAHNQAVQEDDGS--AVSRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEASDR----PPY*FLSVLTELLRGMNG 723
            ASTQCFLH +HAL  +PARTSS    V++ K  +++CRA  Q    DD S  AVSRRL LT LIG AA+GSKVSP DA YGE+ANVFGKPK N D LPYNGDG ++ +P+KWNPS+E E+PGQ  RYED+F      +    P  +      G P    S         Q         GG +  A A  N+LEAS        Y +LSVLT    G  G
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYL-LGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEG 213          
BLAST of EY702835 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.816e-39
Identity = 103/221 (46.61%), Postives = 125/221 (56.56%), Query Frame = 1
Query:   82 MASTQCFLHHHALFITPARTSSSQRH--VANIKATEIVCRAHNQA-VQEDDGSAVSRRLGLTALIGAAAVGSKVSPGDAGYGESANVFGKPKTNADCLPYNGDGLRVAIPSKWNPSREREFPGQAPRYEDHFRVQQQCLRHNHPN*QDIHH*LGFPPTNASGTRTTGWENQPIPANLLQRGGSDPDAAAKANILEAS----DRPPY*FLSVLTELLRGMNG 723
            MAS+ CFL HHA   TPA TS +  H  V  IK ++++CRA   +   E+  +AVSRRL LT LIG+AAVG+K++P +A YGE+ANVFGK KTN D LPY GDG  + IP+KWNPS+E EFPGQ  RYED+F V         P  +      G P    S T       Q         GG DPD+ A ANILE S        Y  +SVLT    G  G
Sbjct:    1 MASSACFLLHHAPS-TPATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLS-TVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEG 219          
The following BLAST results are available for this feature:
BLAST of EY702835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_CUCSA5.273e-4751.82Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_ARATH8.418e-4549.77Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP1_TOBAC1.216e-4348.66Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP2_TOBAC2.292e-4247.75Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP_SPIOL6.670e-4247.53Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP3_TOBAC2.535e-4147.98Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]
PSBP_SOLTU3.310e-4148.17Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA1.643e-4048.62Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLLC1.391e-3947.73Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG1.816e-3946.61Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702835 ID=EY702835; Name=EY702835; organism=Citrus sinensis; type=EST; length=941bp
GNCCACTAGTCCCCCTTGGCACTATTCCGGAATTCCTACCTCGACCCACG
CGTCCGAAAGAGGAGTCACCGAAAAGAAAAAATGGCATCCACTCAATGCT
TCTTGCACCACCATGCACTCTTTATTACCCCAGCAAGAACATCATCATCT
CAGCGCCACGTGGCCAACATCAAGGCCACCGAGATTGTCTGCCGTGCGCA
TAACCAAGCTGTCCAAGAAGATGACGGCAGCGCCGTCTCCCGCCGTTTGG
GTCTGACGGCGCTCATTGGCGCTGCTGCCGTCGGCTCCAAAGTCTCTCCT
GGCGACGCTGGCTACGGTGAATCAGCCAATGTGTTTGGCAAGCCAAAGAC
CAACGCTGACTGCTTGCCATACAATGGAGACGGACTCAGGGTGGCGATTC
CCTCAAAATGGAACCCCAGCAGAGAGAGAGAGTTCCCGGGTCAGGCTCCT
AGATACGAAGACCACTTTCGAGTCCAACAGCAATGTCTCCGTCATAATCA
CCCCAACTGACAAGACATCCATCACTGACTAGGGTTCCCCCCGACGAACG
CCTCAGGAACGCGGACTACGGGCTGGGAAAACCAGCCTATTCCGGCAAAC
CTTCTTCAGAGGGGGGGTTCGGACCCTGATGCTGCGGCAAAAGCTAACAT
CTTGGAGGCTTCGGACCGACCCCCATACTAATTCCTGTCTGTACTAACAG
AACTGCTGCGGGGGATGAACGGGGCGCCCATCACCTAATACCCGCCCCGT
TAAAGGGGGGAAGACCCACCCCCGCACGCACCCACCGGCACACAAAAGGG
GGCCACAGGAACTAAAAAATATGCGGAACGCCTCCCACCTCTTTTAACGC
CGGCGGCACCCTCACCTCGAGATTTCAGGCGACCCCACCTTAAGTCGGCT
GTCAGGTTCCAATTCTCACCCCCCCTTGCCCCAAGACTCCG
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