EY702834

Overview
NameEY702834
Unique NameEY702834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 9.970e-99
Identity = 172/186 (92.47%), Postives = 183/186 (98.39%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            GMRV  YLYDGYWEDIGTIEAF+NANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHI+RAIIDKNARIGD+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct:  327 GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIRRAIIDKNARIGDDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 512          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 6.462e-98
Identity = 173/186 (93.01%), Postives = 180/186 (96.77%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            GMRV  YLYDGYWEDIGTIEAF+NANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct:  336 GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 8.440e-98
Identity = 170/186 (91.40%), Postives = 182/186 (97.85%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            G+RV  YLYDGYWEDIGTIEAF+NANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR  LAAKGS+PIGIG++SHIKRAIIDKNARIGDNVKI+N+D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct:  335 GLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRTLLAAKGSIPIGIGRDSHIKRAIIDKNARIGDNVKIINTDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 520          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.440e-97
Identity = 170/186 (91.40%), Postives = 183/186 (98.39%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            GMRV  YLYDGYWEDIGTIEAF+NANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKI HSVVGLRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIGKNSHIKRAI+DKNARIG+NVKI+NSD+VQEAARET+GYFIKSGIVTIIKDALIPSGT++
Sbjct:  323 GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGKNSHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 350.903 bits (899), Expect = 6.048e-96
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            G+RV  YLYDGYWEDIGTIEAF+NANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET  ++  L+AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIP+GT+I
Sbjct:  335 GLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 1.032e-95
Identity = 167/188 (88.83%), Postives = 181/188 (96.28%), Query Frame = 1
Query:   43 ASGMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            ++GMRV  YLYDGYWEDIGTIEAF+NANLGITKKPIPDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  286 STGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 473          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 1.032e-95
Identity = 167/188 (88.83%), Postives = 181/188 (96.28%), Query Frame = 1
Query:   43 ASGMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            ++GMRV  YLYDGYWEDIGTIEAF+NANLGITKKPIPDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  326 STGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 513          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.760e-95
Identity = 169/186 (90.86%), Postives = 178/186 (95.70%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            GMRV  YLYDGYWEDIGTIEAF+NANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDA+R+ LAAKGSVPIGIGKN   KRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG +I
Sbjct:  336 GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAERKLLAAKGSVPIGIGKNCLYKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI 521          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 345.125 bits (884), Expect = 3.319e-94
Identity = 163/186 (87.63%), Postives = 178/186 (95.70%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            GMRV  YLYDGYWEDIGTIEAF+NANLGITKKP+PDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET+AD++ L  KG +PIGIGKN HI+RAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  329 GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.885e-89
Identity = 160/186 (86.02%), Postives = 172/186 (92.47%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            G+RV  YLYDGYWEDIGTIEAF+NANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR+FLAAKGSVPIGIG            NARIGD+VKI+NSD+VQEAARETDGYFIKSGIVTIIKDA+IPSGT+I
Sbjct:  316 GLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRKFLAAKGSVPIGIG------------NARIGDDVKIINSDNVQEAARETDGYFIKSGIVTIIKDAMIPSGTVI 489          
The following BLAST results are available for this feature:
BLAST of EY702834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
GLGS2_VICFA9.970e-9992.47Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU6.462e-9893.01Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BRANA8.440e-9891.40Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA1.440e-9791.40Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH6.048e-9690.32Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT1.032e-9588.83Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU1.032e-9588.83Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC1.760e-9590.86Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ3.319e-9487.63Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BETVU1.885e-8986.02Glucose-1-phosphate adenylyltransferase small subu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702834 ID=EY702834; Name=EY702834; organism=Citrus sinensis; type=EST; length=932bp
ACTGGTACCCTTCGGCCCGGTCCGGAATCCCACAAAAACCCCGCGTCCGG
GATGAGAGTGCCAACATATTTATATGATGGCTACTGGGAAGACATTGGAA
CAATTGAGGCTTTCTTCAACGCGAATCTGGGGATCACCAAAAAGCCAATT
CCGGATTTCAGCTTCTATGACCGGTCTGCTCCAATTTATACACAGCCTAG
ATATCTACCTCCTTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTAA
TTGGTGAAGGCTGTGTGATTAAGAATTGCAAAATTCACCATTCTGTTGTT
GGGCTTCGATCTTGCATATCAGAAGGTGCAATTATCGAAGATACTTTACT
TATGGGAGCAGATTATTATGAGACAGACGCGGACAGGAGGTTTTTGGCTG
CAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAATTCTCACATCAAGAGA
GCAATAATTGACAAAAATGCTCGAATTGGGGATAATGTGAAGATCGTCAA
CAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACAGATGGATACTTCATCA
AGAGCGGGATTGTCACAATAATCAAGGATGCCTTGATTCCCAGTGGAACC
ATAATCTANACTGTCGTCTTCTCAGTTTCATCCCAAGCTGCGCTGCTGCG
GGTACCTTCCCCTCTATGCTCGAGAATGTCGTAATCTCAAGTCTGCTTCC
ACTTTACCTTTGGCCATCTTTTTGCTATAAGCTGTATATTTCCGGGCAGT
GTAATGTAATTATGAGAGGAATATACGACCTGGAAAAAGGGACTGCTGTA
AAGGTCTAGTTATGCAAAAATAAATCTTTCATTCTAATGTCTGCATCCAC
CTCCTTATCCCGGGGNATGGGACCTTGCCTTTTTTTGGGGAAATCCCCNT
TGGATTTGGTCCAAAAAAAAAAACANAAAAGA
back to top