EY649704

Overview
NameEY649704
Unique NameEY649704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.173e-67
Identity = 125/190 (65.79%), Postives = 149/190 (78.42%), Query Frame = 1
Query:  154 MALSAFSFPTYVSK--ATNSGPHKSSPVTSHFF-GAALFSHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            MAL A++FP  +++  A  S   K +P+ S +  G  L   F  KL     Q+KKR   V ASLSE GEY++QRPPTP++DTINYPIHMKNLS++ELKQLADELR+D IFNVSKTGGHLGSSLGV+ELTVALHYVFNAP+  ILWDVGHQ+YPHKILTGR +KM T+RQT+G +G   +SESEYDCFGTG
Sbjct:    1 MALCAYAFPGILNRTVAVASDASKPTPLFSEWIHGTDLQFQFHQKLT----QVKKRSRTVQASLSESGEYYTQRPPTPIVDTINYPIHMKNLSLKELKQLADELRSDTIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRREKMSTLRQTNGLAGFTKRSESEYDCFGTG 186          

HSP 2 Score: 35.8094 bits (81), Expect = 2.173e-67
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSST+ISA LGMAVGRDLK
Sbjct:  187 HSSTTISAGLGMAVGRDLK 205          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 2.814e-64
Identity = 122/194 (62.89%), Postives = 140/194 (72.16%), Query Frame = 1
Query:  154 MALSAFSFPTYVSKATNSGPHKSSPVTSHFFGAALFSHFSHKLDNHQIQLKKRPNG-------VCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            MA SAF+FP+Y+         K    T      +L S  S   D     LK   N        VCASL+E+GEY+S RPPTPLLDTINYPIHMKNLS++ELKQL+DELR+DVIFNVSKTGGHLGSSLGV+ELTVALHY+FN P+  ILWDVGHQ+YPHKILTGR  KM TMRQT+G SG   + ESE+DCFGTG
Sbjct:    1 MASSAFAFPSYIIT-------KGGLSTDSCKSTSLSSSRSLVTDLPSPCLKPNNNSHSNRRAKVCASLAEKGEYYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTVALHYIFNTPQDKILWDVGHQSYPHKILTGRRGKMPTMRQTNGLSGFTKRGESEHDCFGTG 187          

HSP 2 Score: 35.8094 bits (81), Expect = 2.814e-64
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSST+ISA LGMAVGRDLK
Sbjct:  188 HSSTTISAGLGMAVGRDLK 206          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 1.507e-62
Identity = 121/191 (63.35%), Postives = 141/191 (73.82%), Query Frame = 1
Query:  154 MALSAFSFPTYVSKATNSGPHKSSPVTSHFFGAALFSHFSHKLDNHQIQLKKRPNG-VCASLS---ERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            MAL+ FS        +  G   + P   HF  AA      HKL +   + ++R +  + ASLS   E  EYHSQRPPTPLLDT+NYPIHMKNLS++EL+QLADELR+DVIF+VSKTGGHLGSSLGV+ELTVALHYVFN P+  ILWDVGHQ+YPHKILTGR DKM TMRQT+G SG   +SESEYD FGTG
Sbjct:    1 MALTTFSI-------SRGGFVGALPQEGHFAPAAAELSL-HKLQSRPHKARRRSSSSISASLSTEREAAEYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVELTVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSFGTG 183          

HSP 2 Score: 36.965 bits (84), Expect = 1.507e-62
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKEXK 779
            HSST+ISA LGMAVGRDLK  K
Sbjct:  184 HSSTTISAALGMAVGRDLKGGK 205          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.462e-40
Identity = 71/117 (60.68%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            S  P TP+LDT+N P  +KNL +  LK LADE+RA+ I  VS TGGHLG+ LGV+ELT ALH+VF+ P   ++WDVGHQ YPHKILTGR D++ T+RQ  G SG   +SESEYD FG
Sbjct:    2 SMTPKTPILDTVNSPADLKNLPLDRLKSLADEVRAETIDAVSVTGGHLGAGLGVVELTTALHHVFDTPTDTLIWDVGHQCYPHKILTGRRDRIRTLRQPGGLSGFTKRSESEYDPFG 118          

HSP 2 Score: 35.4242 bits (80), Expect = 5.462e-40
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKEXKK 782
            H+STSISA LG AVGRDLK+  +
Sbjct:  121 HASTSISAALGFAVGRDLKDENR 143          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.672e-39
Identity = 72/115 (62.61%), Postives = 90/115 (78.26%), Query Frame = 1
Query:  364 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            RP TP+LD +NYP  ++ +S  +L Q ADELRA+VI  VS+TGGHLGSSLGV+EL+VA+H VFN P   ++WDVGHQ YPHK+LTGR D++ T+RQ DG SG   +SESEYD FG
Sbjct:    3 RPHTPILDQVNYPSDLRRMSNADLAQCADELRAEVISAVSETGGHLGSSLGVVELSVAIHAVFNTPYDKLVWDVGHQCYPHKVLTGRRDRIRTLRQKDGLSGFTKRSESEYDPFG 117          

HSP 2 Score: 29.261 bits (64), Expect = 2.672e-39
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKE 773
            HSSTSISA LG A  +DL E
Sbjct:  120 HSSTSISAALGFAAAQDLGE 139          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.535e-39
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D+MH++RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQTYPHKILTGRRDQMHSLRQQDGISGFPRRSESEYDTFGT 114          

HSP 2 Score: 30.4166 bits (67), Expect = 4.535e-39
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSQL 133          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.907e-39
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D+MH++RQ DG SG   +SESEYD FGT
Sbjct:   16 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQTYPHKILTGRRDQMHSLRQYDGISGFPRRSESEYDTFGT 126          

HSP 2 Score: 30.4166 bits (67), Expect = 5.907e-39
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  128 HSSTSISAALGMAIGSQL 145          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.907e-39
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D+MH++RQ DG SG   +SESEYD FGT
Sbjct:   16 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQTYPHKILTGRRDQMHSLRQYDGISGFPRRSESEYDTFGT 126          

HSP 2 Score: 30.4166 bits (67), Expect = 5.907e-39
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  128 HSSTSISAALGMAIGSQL 145          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.908e-39
Identity = 73/118 (61.86%), Postives = 91/118 (77.12%), Query Frame = 1
Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            SQ P TPLLDT+  P  ++ L+  +L+QLADELR ++I  V +TGGHLGS LGV+ELTVA+HYVFN P+  ++WDVGHQ YPHKILTGR D++ T+RQ  G SG   +SESEYD FGT
Sbjct:    2 SQEPATPLLDTVKTPDDLRKLAPTQLRQLADELRVEMISAVGQTGGHLGSGLGVVELTVAIHYVFNTPEDRLVWDVGHQAYPHKILTGRRDRIRTLRQAGGLSGFTKRSESEYDPFGT 119          

HSP 2 Score: 26.1794 bits (56), Expect = 5.908e-39
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LG A+   L
Sbjct:  121 HSSTSISAALGFAIANKL 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.908e-39
Identity = 73/117 (62.39%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            + RPPTPLLDT++ P  ++ L   +L+QLADELRA++I  VS TGGHLG+ LGV+ELTVALHYVF+ P+  ++WDVGHQ YPHKILTGR D++ T+RQ  G SG   +SESEYD FG
Sbjct:    2 NDRPPTPLLDTVSTPEDLRRLKPADLRQLADELRAEMISAVSVTGGHLGAGLGVVELTVALHYVFDTPRDVLIWDVGHQAYPHKILTGRRDRIRTLRQGGGLSGFTKRSESEYDPFG 118          

HSP 2 Score: 26.5646 bits (57), Expect = 5.908e-39
Identity = 13/18 (72.22%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LG AV   L
Sbjct:  121 HSSTSISAALGFAVANKL 138          
The following BLAST results are available for this feature:
BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CAPAN2.173e-6765.79Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH2.814e-6462.89Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ1.507e-6263.35Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_MARMM5.462e-4060.681-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS2_JANSC2.672e-3962.611-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_BURS34.535e-3965.771-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCM5.907e-3965.771-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCH5.907e-3965.771-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_NOVAD5.908e-3961.861-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS_SPHWW5.908e-3962.391-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG
back to top