EY649676

Overview
NameEY649676
Unique NameEY649676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:14..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.221e-81
Identity = 160/241 (66.39%), Postives = 186/241 (77.18%), Query Frame = 3
Query:  123 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-L**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINP +    E           + + R      +I+KGKMCCL INDLDA  GRMG TTQ  + ++ +  T
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 253          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.221e-81
Identity = 160/241 (66.39%), Postives = 186/241 (77.18%), Query Frame = 3
Query:  123 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-L**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINP +    E           + + R      +I+KGKMCCL INDLDA  GRMG TTQ  + ++ +  T
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 253          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.207e-80
Identity = 154/239 (64.44%), Postives = 181/239 (75.73%), Query Frame = 3
Query:  123 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-L**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I+P +    E           + + R      +IRKGKMC L INDLDA  GR+G TTQ  + ++ +  T
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNAT 253          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.760e-78
Identity = 158/250 (63.20%), Postives = 181/250 (72.40%), Query Frame = 3
Query:  126 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPL---------**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINP+             E  K+   R R            LI+KGKMC L INDLDA  GR+G TTQ  + ++ +  T
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASD--------LIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNAT 257          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 6.687e-78
Identity = 158/242 (65.29%), Postives = 181/242 (74.79%), Query Frame = 3
Query:  126 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-L**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP +    E           + + R      LI KGKMC L INDLDA  GR+G TTQ  + ++ +  T
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNAT 255          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 4.334e-77
Identity = 158/254 (62.20%), Postives = 183/254 (72.05%), Query Frame = 3
Query:  108 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-L**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINP +    E           + + R      LI+KGKMCCL INDLDA  GRMG TTQ  + ++ +  T
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 253          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.334e-77
Identity = 156/251 (62.15%), Postives = 177/251 (70.52%), Query Frame = 3
Query:  123 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPL---------**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINP+             E  K+   R R   +        +IRKG MCCL INDLDA  GRMG TTQ  + ++ +  T
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAE--------IIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 257          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.394e-75
Identity = 152/255 (59.61%), Postives = 177/255 (69.41%), Query Frame = 3
Query:  111 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPL---------**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINP+             E  K+   R R   +        +IRKG +CCL INDLDA  GRMG TTQ  + ++ +  T
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAE--------IIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 257          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.542e-74
Identity = 151/253 (59.68%), Postives = 181/253 (71.54%), Query Frame = 3
Query:  111 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPL---------**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINP+             E  K+   R R   +        +IRKG MCCL INDLDA  GRMG TTQ  + ++ +  T
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAE--------IIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 252          
BLAST of EY649676 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.542e-74
Identity = 146/246 (59.35%), Postives = 176/246 (71.54%), Query Frame = 3
Query:  102 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-L**VPENWKVACWRTRXVDQGRVP*GX*LIRKGKMCCLMINDLDARTGRMGCTTQSQLTSKWLTHT 836
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINP +    E           + + R      +I+KGKMCCL INDLDA  GR+G TTQ  + ++ +  T
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNAT 250          
The following BLAST results are available for this feature:
BLAST of EY649676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA2_LARTR2.221e-8166.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.221e-8166.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.207e-8064.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.760e-7863.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU6.687e-7865.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH4.334e-7762.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC4.334e-7762.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.394e-7559.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.542e-7459.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.542e-7459.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-C06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649676 ID=EY649676; Name=EY649676; organism=Citrus sinensis; type=EST; length=869bp
CGGACGCGTGGGCACGCACTCAGCGCATTGCTTCGCTTTCCTTTGCCTGC
ATTACAGCGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGC
TAGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTG
CAACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTA
AGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTAC
TGCTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCC
TTGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGT
GCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGC
TGTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACT
TGGACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAG
CTTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGT
TCCTCTCATCTTGGGTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCC
AATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACCCATTATGATGAGTG
CCGGAGAATTGGAAAGTGGCATGCTGGAGAACCCGCNTAGTTGATCAGGG
CAGAGTACCGTGAGGCANCTGACTTATCAGGAAAGGAAAAATGTGCTGCC
TCATGATCAATGATCTTGATGCCAGAACTGGTCGTATGGGTTGCACCACC
CAGTCACAGTTAACATCCAAATGGTTAACGCACACTCATGAACATTGCTG
ATACCCCAACTTGTGNCAA
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