DY306020

Overview
NameDY306020
Unique NameDY306020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1228
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6808 contig Csv1_Contig6808:1..1228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.201e-24
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTIRLIP 273
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP  SPYAGGVFLVTI   P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPP 58          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.569e-23
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTIRLIP 273
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPY+GGVFLVTI   P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPP 58          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.569e-23
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTIRLIP 273
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPY+GGVFLVTI   P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPP 58          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.050e-23
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTIRLIP 273
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP  SPY+GGVFLVTI   P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPP 58          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.050e-23
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTIRLIP 273
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPYAGGVFLV+I   P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPP 58          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.050e-23
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTIRLIP 273
            MASKRILKELKDLQKDPP++CSAGPVAEDMFHWQATIMGPP SPYAGGVFLV+I   P
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPP 58          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.053e-19
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTIRLIP 273
            MA++RILKELK+LQ+DPP SCSAGP  EDMFHWQATIMGP  SPY+GGVFLV I   P
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPP 58          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.000e-19
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTIRLIP 273
            MASKRI KEL+DLQ+DPP SCSAGP  +DMF WQATIMGP +SP+AGGVFLVTI   P
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPP 58          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.287e-17
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTI 261
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPP+SPY GGVF +TI
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTI 54          
BLAST of DY306020 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.287e-17
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1
Query:  100 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPNSPYAGGVFLVTI 261
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPP SPY GGVF +TI
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTI 54          
The following BLAST results are available for this feature:
BLAST of DY306020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UBC10_ARATH9.201e-2491.38Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH1.569e-2389.66SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH1.569e-2389.66Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC8_ARATH2.050e-2389.66Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC4_SOLLC2.050e-2389.66Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH2.050e-2387.93Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC29_ARATH1.053e-1975.86Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC30_ARATH4.000e-1975.86Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBCD1_DROME1.287e-1774.07Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_CAEEL1.287e-1774.07Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BB04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306020 ID=DY306020; Name=DY306020; organism=Citrus sinensis; type=EST; length=1228bp
AGTTTTTGTTTCTAATTTTCCCGATCTCCCTGTCTCCCTCACGAATCCAC
ATATTGCAAGGCCAAATCAGGAGGATCTGCTGCTTCTCAGGTTGAAACTA
TGGCGTCGAAACGGATCTTGAAGGAGCTCAAAGATTTGCAGAAGGATCCT
CCTACATCATGCAGTGCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCA
GGCGACAATCATGGGTCCTCCAAATAGTCCGTATGCTGGGGGTGTATTTC
TAGTGACTATCAGATTAATCCCCCATATGCTTCAAAGTGCAACTTTTACG
CAGTGAAAACATATTTTTATATGCCTGATCTTGAGATCATTAAGAGTGAG
TCTCAAATCCACTTCTTAAAGCGAATTAAGGCACTCCTAGAAGATGTTCA
CATTATAAGAATCCCCCCACTTCATGTGTAAGGGCACATAATTATACATC
TGAAAGTCAAATCATCCAAGAAGTAGGATGATAACTCCTTGCTACATGCA
TTTTCTCGGATTGAGAGCTACCCCCAATAAGAATAAACTTAATTATTTGG
TTACCGCTATCAAATCCATCTCACCATCAATAGAACACTTCATGGCAAAA
TTTAGGCGGTCATCGAGAAAATCTAAATTATAGAGCAGATTTTGTAACCA
AGGAAAAGTGTACTTTCTATGGTGGAGAACTTTAGATTGTAGACTTACAC
GACTCTAGCGAGTGGAGCATAATGTTATATAGACATAAATATGGATCTAA
ACATCTTTATTGGTGCTAGTGACGTTGAGCACAGAATAAATAAACAAGAC
ACGACGACAAAAGTTGAAAGAAATGAGTACGATGACGGAATTTAAAAGAA
GCAATATATTGTATGGGGACAAGATAAAAGGAAGTAAGAAGTGCGAAGGG
TTTATAAGAAGGGAGAGGAGACAAAGAAATTAAGATTGGTGAGTAGAGTT
GGGCTAGATGGAGAGGTGGCGAAAAGGGTGGAAGTGGGTGTGAAATGAAA
AGCAAGGGAACGGGCCTAGACGAGAAGTCCGCAAAAAATGGTTAACAATA
AAGAAGTGATACATGGAGTACAATAAATACCTGATCATTACTGGGCAGCA
GACCATGGGGAAGCATGCGATGATAATTGCACTTGACGTAGTTGCGGTGG
GGATGACATATGCTCGCCGGGGAGTCCACAGAAATTAAACCATACGTCGA
GAGTGCCGACACGAATCAGAGAAGCGCG
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