DY305902

Overview
NameDY305902
Unique NameDY305902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1267
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305902_ssr352 microsatellite DY305902_ssr352:352..363. BLAST: Citrus ESTs to Prunus persica proteins V1
DY305902_ssr676 microsatellite DY305902_ssr676:676..690. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5488 contig Csv1_Contig5488:367..1631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.397e-37
Identity = 71/82 (86.59%), Postives = 79/82 (96.34%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 248
            LVL+TNVAGAGDI+R +VKGSRTGWMS+SRNWGQNWQSNAVLVGQ+LSFRV  SDRR+STSWN+VP+NWQFGQTFVGKNFRV
Sbjct:  176 LVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFRV 257          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.671e-36
Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 248
            LVL+TNVAGAGDI R +VKGS+TGWMS++RNWGQNWQSNAVLVGQSLSFRV +SDRR+STSWNI P+NWQFGQTFVGKNFRV
Sbjct:  179 LVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFRV 260          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 7.019e-35
Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 248
            LVLVTNVAGAG+I+R+ VKG+ T WM+MSRNWGQNWQSN+VLVGQSLSFRV +SDRRSSTSWNI PANW+FGQTF+GKNFRV
Sbjct:  176 LVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFRV 257          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.667e-34
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 248
            LVLVTNVAGAGDI  V+VKGS+T W+ MSRNWGQNWQSNAVL+GQSLSFRV ASDRRSSTSWN+ PA WQFGQTF GKNFRV
Sbjct:  181 LVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFRV 262          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.852e-33
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 248
            LVL+TNVAGAGDI+R +VKG+ TGWM MSRNWGQNWQSN+VLVGQ+LSFRV  SDRR+STSWN  PA W FGQTF GKNFRV
Sbjct:  183 LVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFRV 264          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.497e-32
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 248
            LVLVTNVAGAGD+++V+VKGS T W+ +SRNWGQNWQSNA+LVGQSLSFRVK SD RSSTS NI P+NWQFGQT+ GKNFRV
Sbjct:  177 LVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFRV 258          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.779e-26
Identity = 57/80 (71.25%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 242
            LVLVTNVAGAGD+  V++KGSRTGW  MSRNWGQNWQSNA L GQSLSF+V ASD R+ TS N+    WQFGQTF G  F
Sbjct:  167 LVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.779e-26
Identity = 57/80 (71.25%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 242
            LVLVTNVAGAGD+  V++KGSRTGW  MSRNWGQNWQSNA L GQSLSF+V ASD R+ TS N+    WQFGQTF G  F
Sbjct:  167 LVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 7.779e-26
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 242
            LVLVTNVAG GD+  V++KGS TGW  MSRNWGQNWQSN+ L GQSLSF+V  SD R+ TS N+VPA WQFGQTF G  F
Sbjct:  172 LVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of DY305902 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.733e-25
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    3 LVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 245
            LVLVTNV GAGD+  V VKGSRT W  MSRNWGQNWQSN +L GQ+LSF+V ASD R+  S NI PA+W FGQTF G+ FR
Sbjct:  173 LVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
The following BLAST results are available for this feature:
BLAST of DY305902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXPA4_ARATH4.397e-3786.59Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP16_ARATH1.671e-3685.37Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA6_ARATH7.019e-3582.93Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA3_ARATH2.667e-3484.15Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ3.852e-3379.27Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ARATH2.497e-3279.27Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA4_ORYSJ7.779e-2671.25Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI7.779e-2671.25Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ORYSJ7.779e-2670.00Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP15_ARATH1.733e-2569.14Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DC11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305902 ID=DY305902; Name=DY305902; organism=Citrus sinensis; type=EST; length=1267bp
GCTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTTTAAAAAAAATAGAAAAAAAATAATTAATCAATC
TTTCCCGCCATGGCCATTTTCCAATTTTACCCTTTCTTATTATAACTTTA
AATATATATATATGTATATTTTTCTTTTTTGCTTTGACTTGTGGGTGATG
GTCCTGTTGGAGAACGTGAAAGTTAAAGAGTAAAATCGGGAGGGTAATTG
GTTGGAAAAGAGTGAAACTTTATTATCATTTTCATTTTTTTTGGGTTTCT
TTTTGATTGGTGGGTTAATTAATGGCTTTGTTGTTGAATGATTGGTGTTT
AGGGAAAGCTAGATGAGGGCTGAAGCGGCTGCAGTGGAATGATGTAGCCC
GCAGCTTTAATTAATTAGCTTTTATATTTCGTTTAGTGTTGTAATATTAT
TAAGTGTATTATGAAGATGATGGAAGGTGGTGGTGGTGGTTGTTTATATT
ATGTAGTANTTTAAATATGGAATTTGTTGAAGAGTATTGGGTTGGTTTTT
GTTGTGAGAAAAAAAAAGAAAAAAATAAATGGGTTGGGGGGGGNGGGTGA
AGTAATAGGAGTAAAGAGAAGNAATAAAATTTTAGATGGGGGGAATATTA
AAAGAGGGANGGGGGGGGAAAGGTTAGGAAGGGAAGAATTATGAAGGGGG
TGGTGAAAGGAAGAGAAGAAAGGGGGGGGGAAAGAAGAAAAAGAAGGAAA
AGAAAAAGAGAGATAAGAAAATTAGNGAGAAAGATAGGGGTGGAAGGTGA
NANGTGTGAAAGGAGGTAGAATTATGGGTGAAGGAGGTNNGGATAGTATT
AATTATGAAGAGGAGAAGAAAGAGTTGTAGAAGTGTGGAGGGTATAAANG
AATAGAGGTGAGGGANGTGTATATAAGTTGGNAGAAGATAAAAAGAAAGA
GGAAAGGAGGAATNANNTTAAAAGAGATAGGANNGTGAATTGGGATTATG
GAGGAANGGTATAGGANATGAGATGATTGTAGGATTGAAANAAAGTTGGG
TGTGTGAGGTGAATAAG
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