EY702684

Overview
NameEY702684
Unique NameEY702684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1151 contig Csv1_Contig1151:19..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.368e-87
Identity = 126/156 (80.77%), Postives = 138/156 (88.46%), Query Frame = 1
Query:  118 MAMAALRREGRRFAT-PLISPRPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKA 576
            MAMAALRREGRR A  P  SP P+ A+RS  +S  EE    GVRSISTQ+VRNRMKSVKNIQKITKAMKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA
Sbjct:    1 MAMAALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKA 156          

HSP 2 Score: 105.916 bits (263), Expect = 1.368e-87
Identity = 59/107 (55.14%), Postives = 71/107 (66.36%), Query Frame = 2
Query:  560 ERRQRQLVRDSKKDIELIITELQKNPLNYTQVSVLADXYLKNVEFDALRIIYSKVHSRGLLSADNGNCIIA*ACGERAEIWGKLGELDSYEMKAVEQRGNT-SNLPE 877
            E+ + QLVRDSKKDIELIITELQKNPLNYTQVSV+AD  LKNVEFDALRI+++K  S           +        +E  GKLG+LDSYE++  E +     NL E
Sbjct:  152 EKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYEIEGAESKSEVLQNLTE 258          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.637e-82
Identity = 118/155 (76.13%), Postives = 138/155 (89.03%), Query Frame = 1
Query:  118 MAMAALRREGRRFATPLISPRPIAAIRSPFLSE-EDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAI 579
            MAMA  RREGRR   P I+ RPIAAIRSP  S+ E+  LGVRSISTQ+VRNRMKSVKNIQKITKAMKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI
Sbjct:    1 MAMAVFRREGRRLL-PSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAI 154          

HSP 2 Score: 98.5969 bits (244), Expect = 3.637e-82
Identity = 56/107 (52.34%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  560 ERRQRQLVRDSKKDIELIITELQKNPLNYTQVSVLADXYLKNVEFDALRIIYSKVHSRGLLSADNGNCIIA*ACGERAEIWGKLGELDSYEMKAVEQRGN-TSNLPE 877
            E+ +  + RDSK DI L +TEL KNPLNY QVSVLAD  LKNVEFDALRI+Y+K HS           +      + +EI GKLGELDSYE++  E +G    NL E
Sbjct:  149 EKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAE 255          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.804e-12
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  247 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 573
            S + +RNR+ SVK+ QKIT AMKMVAASKLR  Q +AE  R        +L                 T T   + +++V ++SD+GLCGG NST V+ ++   K  +G  +  K + +G K +
Sbjct:    3 SLKDIRNRIGSVKSTQKITSAMKMVAASKLRRAQEQAEAGRPFADRMARMLASLAANVSGATGGPRLMTGTGSDQVHLLVVVTSDRGLCGGFNSTIVREARRTIKRLTGEGRTVKLLCVGRKGR 126          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.019e-12
Identity = 48/119 (40.34%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  235 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAI 579
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++I
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSI 140          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.249e-12
Identity = 41/124 (33.06%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  247 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 573
            S + ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +
Sbjct:    3 SLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGR 126          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_MOUSE (ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.953e-12
Identity = 48/123 (39.02%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  235 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAI 579
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++       +    D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K I
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKADIKAPE----DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGI 140          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_EHRCR (ATP synthase gamma chain OS=Ehrlichia chaffeensis (strain Arkansas) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.953e-12
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  268 RMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVD-------AKKN--VIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA 570
            R+KSVK+IQK TK M+M++A+KL  +Q K EN++      ++++   P+         AKK   ++V +SSD+GLCG  N+  VK +KS  +     +KE K +  G+KA
Sbjct:   10 RIKSVKSIQKTTKVMQMISAAKLHRVQQKLENAKKHLLELSSIVDYVPSDGVHNCASIAKKERVLLVVMSSDRGLCGNFNNLIVKFTKSYVEKLESSNKEVKLIFFGKKA 119          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.169e-11
Identity = 45/128 (35.16%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  247 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA------------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKA 576
            S + +++R+ SVK+ QKITKA +MVAA+KLR  Q  AE +R    P+   L D     A                  +K+++V +++DKGLCGG+NS  VK +K+  K      K+ ++ ++G+K +A
Sbjct:    3 SLKELKDRIGSVKSTQKITKAKQMVAAAKLRRAQANAEAAR----PYAERLADVMASLAGKVSGDSAPRLLAGSGNDQKHLLVVVNTDKGLCGGLNSNIVKEAKAQAKKLIAAGKDVQFYLVGKKGRA 126          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.527e-11
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  259 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAI 579
            +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K+I
Sbjct:    6 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSI 115          
BLAST of EY702684 vs. ExPASy Swiss-Prot
Match: ATPG_AZOC5 (ATP synthase gamma chain OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.527e-11
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  247 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG----------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEK 567
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q+ AE +R   +   ++LG          DTP     T   +K++++  +S++GLCG  N+  V+  +    L  G  K+ K+  +G K
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQMAAEAARPYAERMDSVLGNIASGVTLSADTPLLLSGTGKDEKHLLLVCTSERGLCGAFNTNIVRAVRERANLLIGQGKDVKFFCVGRK 124          
The following BLAST results are available for this feature:
BLAST of EY702684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ATPG3_IPOBA1.368e-8780.77ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH3.637e-8276.13ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_RHOCS1.804e-1237.10ATP synthase gamma chain OS=Rhodospirillum centenu... [more]
ATPG_BOVIN4.019e-1240.34ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_ROSDO5.249e-1233.06ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_MOUSE8.953e-1239.02ATP synthase subunit gamma, mitochondrial OS=Mus m... [more]
ATPG_EHRCR8.953e-1238.18ATP synthase gamma chain OS=Ehrlichia chaffeensis ... [more]
ATPG_ERYLH1.169e-1135.16ATP synthase gamma chain OS=Erythrobacter litorali... [more]
ATPG_RAT1.527e-1140.00ATP synthase subunit gamma, mitochondrial OS=Rattu... [more]
ATPG_AZOC51.527e-1136.89ATP synthase gamma chain OS=Azorhizobium caulinoda... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-A05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702684 ID=EY702684; Name=EY702684; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGTCGACACCTGAGCTCGCACGACCCAAACAGAACATAAAG
CTTTGGATCTGCAGCGTTCAAAATAAAATATTTCTAGGGTTTCCTACGAC
GACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGAAGGCCGG
CGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAATCAGATC
CCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCTATTTCAA
CTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCAGAAAATT
ACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGT
TAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTG
GTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCT
TCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAG
CAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACG
TCATCTTGGGAGAGAAGGCAAAGGCAATTAGTACGTGACTCAAAGAAAGA
TATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCAATTATACCC
AGGTTTCCGTTCTTGCAGATGNATATCTTAAGAATGTAGAATTTGATGCT
TTGAGGATTATCTATAGCAAAGTCCATTCCCGTGGTCTCCTTTCTGCCGA
CAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAGAGAGCCGAAATCT
GGGGGAAGCTTGGTGAGCTAGACTCCTATGAAATGAAGGCNGTGGAACAA
AGGGGGAATACTTCAAATCTGCCTGAGTCCAATTCTCTGGGTCATGGTCA
TGCGGG
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