DY305848

Overview
NameDY305848
Unique NameDY305848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1249
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11493 contig Csv1_Contig11493:430..1678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 8.829e-107
Identity = 182/200 (91.00%), Postives = 192/200 (96.00%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG+GADKA GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGI +GD+LW+ARYILERITEIAGVV+SFDPKPI+GDWNGAGAH NYSTKSMRNDGG ++IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  157 YYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 2.569e-106
Identity = 182/200 (91.00%), Postives = 190/200 (95.00%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG GADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGI +GD+LW+ARYILERITEIAGVVLSFDPKPIKGDWNGAGAH NYSTK+MRNDGG +VIK AIEKLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  157 YYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 9.762e-106
Identity = 181/200 (90.50%), Postives = 191/200 (95.50%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG+GADKA GRDIV++HYKACLYAGINISGINGEVMPGQWE+QVGP VGI +GD+LW++RYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTKSMRNDGG +VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  157 YYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 383.259 bits (983), Expect = 1.665e-105
Identity = 179/200 (89.50%), Postives = 191/200 (95.50%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG+GADKA GRDIV++HYKACLYAG+NISGINGEVMPGQWEFQVGP VGI +GD++W+ARYILERITEIAGVVLSFDPKPIKGDWNGAGAH NYSTK+MR DGG +VIKKAI+KLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  157 YYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 2.840e-105
Identity = 179/200 (89.50%), Postives = 190/200 (95.00%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCGVGADKA GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP VGI +GD+LW+ARYILERITE+AGVVLSFDPKPIKGDWNGAGAH NYSTK+MRNDGG + IK AI+KLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  157 YYCGVGADKAFGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEEIKSAIQKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 4.845e-105
Identity = 179/200 (89.50%), Postives = 190/200 (95.00%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG+GADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGI +GD++W ARYILERITEIAGVVLS DPKPI+GDWNGAGAH NYSTKSMRN+GG ++IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  157 YYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 6.327e-105
Identity = 179/200 (89.50%), Postives = 189/200 (94.50%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG GADKA GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGI +GD++W+ARYILERITE+AGVVLSFDPKPIKGDWNGAGAH NYSTKSMR DGG +VI KAIEKLGK+H EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRP+SNMDPYVVTSMIA+TTILWKP
Sbjct:  157 YYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 4.101e-104
Identity = 175/200 (87.50%), Postives = 189/200 (94.50%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG+GADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGI +GD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG ++IKKAIEKLG RH EHIAAYGEGNERRLTG+HET DINTFSWGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  157 YYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 377.867 bits (969), Expect = 6.996e-104
Identity = 178/200 (89.00%), Postives = 189/200 (94.50%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG+GA+KA GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGI + D+LW+ARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTKSMRNDGG +VIKKAI KL KRH EHIAAYGEGNERRLTG+HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  157 YYCGIGANKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAITKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of DY305848 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 9.137e-104
Identity = 178/200 (89.00%), Postives = 188/200 (94.00%), Query Frame = 1 
Query:    4 YYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGIYSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 603
            YYCG GA+KA GRDIV+SHYKAC+YAGINISGINGEVMPGQWEFQVGP +GI + D+LW+ARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTKSMRNDGG +VIKKAI KL KRH EHIAAYGEGNERRLTGRHETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  157 YYCGTGANKAFGRDIVDSHYKACIYAGINISGINGEVMPGQWEFQVGPSIGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIAKLEKRHKEHIAAYGEGNERRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
The following BLAST results are available for this feature:
BLAST of DY305848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_VITVI8.829e-10791.00Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA_VIGAC2.569e-10691.00Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_VITVI9.762e-10690.50Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA1.665e-10589.50Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA1_PHAVU2.840e-10589.50Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA1_ALNGL4.845e-10589.50Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_MEDSA6.327e-10589.50Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA3_MEDSA4.101e-10487.50Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA3_PHAVU6.996e-10489.00Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA2_SOYBN9.137e-10489.00Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CC12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305848 ID=DY305848; Name=DY305848; organism=Citrus sinensis; type=EST; length=1249bp
GCTTACTACTGCGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGT
GAATTCTCACTACAAAGCTTGCCTTTACGCTGGAATTAACATCAGTGGCA
TTAACGGTGAAGTTATGCCGGGTCAGTGGGAATTCCAAGTGGGTCCCTGT
GTGGGTATCTATTCTGGTGATCAGTTATGGATGGCTCGGTACATACTCGA
GAGGATTACTGAAATTGCCGGAGTTGTTCTCTCATTTGATCCAAAACCAA
TCAAGGGTGACTGGAATGGTGCTGGTGCACACGCCAACTACAGCACCAAG
TCTATGAGGAATGATGGTGGAATTGATGTGATCAAGAAGGCAATTGAAAA
GTTGGGGAAACGCCATGGGGAACACATTGCTGCTTATGGAGAGGGCAACG
AAAGAAGACTGACAGGTCGACATGAAACTGCAGATATCAACACTTTTTCT
TGGGGTGTCGCTAACAGAGGTGCCTCCATTCGCGTTGGTCGTGACACTGA
GAAAGAAGGAAAGGGATACTTTGAAGACAGAAGGCCAGCTTCAAACATGG
ACCCATATGTTGTGACTTCAATGATCGCTGAAACCACCATTCTCTGGAAG
CCTTAGAAAACAAACTTGAGCATGGATGACGAAGAAGAAATCGAGGGAAA
ATGAAAGCTTAAATTGAACCCACCACAAAAATAATTCTTATGTTTTTATA
ATTTGTCTATGCATTTAAGTCTGTTGTTTGAATTTGTTCCTTGCCATTCA
AAACTGTACTCTGTTTCTCTTGTTCATCATTCTTTGGGATGCTCATTTGT
GATTACTATATTATAATTTAAAACTATTTCCCCTTCTGTTTAAAAATAAA
AAAGATTATACCAAAAAAAAAAAAAAAGGGGGGCCCCGTACCCATTCCCC
CCAAAGTGAACCGTAATACATTTCCCGGGCCGCCCTTTTTAAACGCCGGA
AACGGAAAACCCCGGCCTTTACCCACTTAAACCCCCTTCAAACAATCCCC
CCCTTTCCCCCCCCTTGCGTAAAACCAAAAAACCCCCCCCCCCACTCCCC
CCCCTCCCAACCATTTCCCCCCCCCACAAAGGGCGAAAGGGCAAAATTTT
TAACCCCCTTAAAATTTTTTTTTTAAAATATTCGCCGTTTTTAAATTTTT
TTTTTTTTTAAACCCCCCCCCCCTCTTTTTTTTTTTCTCCCCCAAAAAGA
CCCCCCCAAAAAACACCCTCCGCCCACACAAACCCCCCCCCCCCTTTAA
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