DY305781

Overview
NameDY305781
Unique NameDY305781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1201
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6742 contig Csv1_Contig6742:1..1201. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305781 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 4.689e-41
Identity = 79/132 (59.85%), Postives = 99/132 (75.00%), Query Frame = 3 
Query:  162 ASSPRTVEEIYKDFCARRAGVVRALTYDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLINDQPTVFEVV 551
            A +PRTVEE+++DF  RRAG+++ALT DV EF+ LCDP+KENLCLYGHPNE W                  GINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR   ++ +RKRLF+++ND PT+FEVV
Sbjct:    6 AYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVV 137
The following BLAST results are available for this feature:
BLAST of DY305781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH4.689e-4159.85PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2BC11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305781 ID=DY305781; Name=DY305781; organism=Citrus sinensis; type=EST; length=1201bp
GACATCATCTCGTCTCCTCGACTCGATCTCCATGGTCTCACCGTACCCTT
ACTCTAATTCAAATTCCTCCAGTTCGTCCAATTCGCTCCTCTAATTAAAT
CCAATTTAATAGAATCTCACTTACTAATTAGATCTCCAATATTTGCTTTG
CTATGGAAATGGCCTCCAGCCCCCGCACCGTGGAGGAGATCTACAAAGAT
TTCTGCGCTCGTAGAGCCGGCGTTGTTCGCGCTTTAACTTACGATGTCGA
TGAATTTTACGGACTCTGCGATCCAGATAAGGAGAATCTGTGCTTGTACG
GCCATCCTAACGAGTCGTGGGAAGTGACGTTGCCGGCAGAGGAAGTTCCG
CCGGAGCTTCCTGAGCCGGCACTTGGGATTAATTTTGCGAGAGATGGGAT
GAACAGGAAGGACTGGCTGTCTTTGGTTGCAGTGCACACTGATTCATGGT
TGCTTTCAGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGG
AAACGTCTGTTTAGCTTGATCAATGATCAACCTACTGTGTTTGAAGTTGT
AACAGAAAGGAAGCCTATAAAAGATAAACCCAGTGTGGATAGTAGCAGCA
AATCTCGCGGCAGCACTAAGGTTTGAGAGATCAACTCAATTTAAAAATTT
TAAGTTTTCTTTCTTTGCAAGGTTTTCAAATTCAATTTTGTCACATGCAT
TCTTTATTGTTCAGTGGTTCTCTCTGCTATAACCAAAATAAATGTGAATA
AAGAAGCCTATTATAAACTATTGAGGCTCAGAACAGTGATCTTGCAATTG
TAATGTTGTTTAAGTAATGCCTCGTTAAAGATGATTGAAGAATGTAGAGG
AAGCCTGAAATTCCAAAAAATGGGCTTCCTGCAAAAAAGAATTCTTCCCT
TCTCAATCTGCTTGTGTTTACTGTTTTAAATAAATCCTTATTTAAAAATT
CCATGATTGGCTTTCTTCCTTGGCCCAAAAATTAAATGGAGGGCCAAGTG
GAAAATTAACCCTTAACCTAGCCAAAAGAAAAATTTTCCAAGAAAAGAGA
AGGAAGAACAATTAGGGAAACCACTTTTTGGGGGAGCCCGGGGGGGGAGA
AATAAAAAAACCAAAAAAAAAAATTTTTGGGAAATGGGGGGGGGGAAAAC
CTCTGGGGAGAAAAGGGGGGTTTTTCCCGGGGGGGAAAAGGGGGGGGGGG
G
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