DY305695

Overview
NameDY305695
Unique NameDY305695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1309
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6719 contig Csv1_Contig6719:1..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305695 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11
Identity = 70/267 (26.22%), Postives = 104/267 (38.95%), Query Frame = 2 
Query:    2 LSRLLELNLADCKNLKSLPSSLCKLNSLEELCLSGSAIEELPSPIECLSAXXXXXXXXXXXXXXXXXP--FDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXX--RNNFERIPEXXXXXXXXXXXXXXNCERLQSLPKLPCNLYELNAQHCTTLESLSGLFSSYKCVCFYLNENFKLDR-KLRGIVEDALQNIQLMATARWKEI---REKISYPALQGHVVLPG----NEIPMWFSSQGMGSSITLKMQRGCFSNNKVLGFVFC 766
            L  L+ L+++ C  L+SLP  +  L++L     S + I   PS I  L+                  P   +GL+SL YL L+ C +                     RNNFE +P               +C+RL  LP+LP  L EL+               + K + + + +  KL R KL     D + N  L A   ++ I   R  IS        V  G     +IP WF  QG  SS+++ +    +  +K LGF  C
Sbjct:  759 LKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVD----------CHMALKFIHYLVTKRKKLHRVKLDDAHNDTMYN--LFAYTMFQNISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013
The following BLAST results are available for this feature:
BLAST of DY305695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMVRN_NICGU9.692e-1126.22TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1DH03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305695 ID=DY305695; Name=DY305695; organism=Citrus sinensis; type=EST; length=1309bp
TCTATCTAGGCTTTTGGAATTGAACCTTGCAGATTGCAAAAATCTTAAGA
GTCTCCCAAGCAGCCTATGTAAGTTGAATTCTCTGGAAGAGTTATGCTTA
AGCGGATCCGCAATTGAAGAGCTGCCTTCACCCATCGAGTGTCTCTCTGC
GCTTTGCGTCTTAGAGCTTGAAAAGTGTAAAAGTCTTAAGAGTCTCAAAT
TACCTTTTGATGGCTTGTACAGTCTAACGTATCTATATCTAACTGATTGT
GCCATCACAGAGTTACCTGAAAGCCTTGGCCTGTTGTCCTCACTAGAAGA
ATTGTATCTAGAGAGAAACAATTTTGAAAGAATACCAGAAAGCATCATAC
GACTTTCGAAGTTGTCAAGGCTCCTCGTAAGTAATTGTGAGAGGCTTCAA
TCCTTGCCAAAGCTTCCATGCAATCTATACGAGTTGAATGCACAACATTG
CACGACATTGGAATCATTATCAGGTTTATTCTCAAGTTATAAATGTGTCT
GTTTTTACCTGAACGAAAATTTTAAATTGGATCGGAAGCTCAGAGGTATT
GTCGAAGATGCTCTGCAAAATATTCAGCTAATGGCAACTGCACGTTGGAA
AGAAATACGGGAAAAGATATCTTATCCAGCTCTTCAAGGCCATGTCGTTT
TACCTGGGAATGAAATTCCGATGTGGTTTAGCTCTCAAGGTATGGGATCT
TCTATAACCTTGAAGATGCAACGAGGTTGCTTCAGTAATAACAAAGTGCT
CGGCTTTGTTTTCTGCACTATTGTAGCATTTCAAGACCATCATGTCCTGG
GATTGGTCTTTTGGATTATACTGTGAATTCAAAGTCAAACTCAAAGATTG
TGATCCGCATGTCATACAAATAATATCTGGGGCGAGTTGAATATGTAGAG
CCTGATTACTTAGTTTTTGGGGTAATATTTCTTCGATTCATGAGGATCTA
AATGGGTTGTTGGGAATACACCTACGTTTCCTGGAGGCATTCCAATTCTT
TTTTAAGAAACTGGTTGCGTTCTGAAAACTTTGGGAGGGGTGGGGGGGGG
GAAAAAAATGTGGAAATCATTTTTTTTTTCCACCCTTCAAATTTTATGGG
ATTTCAATGGAAAAATCCCCGCCCAAAGGGTTTCCCCCCACACGGGAGAA
AATAAAGGAACCCCCACCCCCCAACAAAAATATAGAAAAAATATTATAAG
GGGAGGGAAAAAAAAACGTGAGAAGTGTTATAAGATATTTCTGGGCTCTC
CTTCCCTTTNCTCTCTTAGATGAGATATAGAAGAGGGGGGGNCGCTCACT
CACAATAAC
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