DY305620

Overview
NameDY305620
Unique NameDY305620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1278
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305620_ssr870 microsatellite DY305620_ssr870:870..881. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6701 contig Csv1_Contig6701:1..1278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305620 vs. ExPASy Swiss-Prot
Match: YE72_SCHPO (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe GN=SPAC4A8.02c PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.715e-25
Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  333 VWNQIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEVGSFGLWPVLSTSFPFHICSMLQ*LYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 797
            + N +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D    L+KIVPE                                  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ I L E R  P  R +V T+ G+
Sbjct:   20 ITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRADMNDILDKIVPE----------------------------------SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLAEFRRQPHSRTIVCTIIGL 139          
BLAST of DY305620 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTY (UPF0047 protein yjbQ OS=Salmonella typhimurium GN=yjbQ PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.147e-23
Identity = 64/153 (41.83%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  345 IVKEIAQDLSEF---KCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEVGSFGLWPVLSTSFPFHICSMLQ*LYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 794
            I  EI   LS     + GL HL LLHTSASLT+NEN D  VR D E    K VP+                                  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIWL EHR    PRK++ TL G
Sbjct:   19 ITDEITDKLSGLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD----------------------------------NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137          
BLAST of DY305620 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTI (UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.147e-23
Identity = 64/153 (41.83%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  345 IVKEIAQDLSEF---KCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEVGSFGLWPVLSTSFPFHICSMLQ*LYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 794
            I  EI   LS     + GL HL LLHTSASLT+NEN D  VR D E    K VP+                                  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIWL EHR    PRK++ TL G
Sbjct:   19 ITDEITDKLSGLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD----------------------------------NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137          
BLAST of DY305620 vs. ExPASy Swiss-Prot
Match: YJBQ_ECOLI (UPF0047 protein yjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.391e-22
Identity = 60/154 (38.96%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  333 VWNQIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEVGSFGLWPVLSTSFPFHICSMLQ*LYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 794
            V ++I+ ++A D+     GL HL L HTSASLT+NEN D  VR D E F  + VP+ G++                                  +H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIWL EHR     R+++ TL G
Sbjct:   19 VTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGNY----------------------------------EHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137          
BLAST of DY305620 vs. ExPASy Swiss-Prot
Match: YJBQ_ECO57 (UPF0047 protein yjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.391e-22
Identity = 60/154 (38.96%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  333 VWNQIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEVGSFGLWPVLSTSFPFHICSMLQ*LYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 794
            V ++I+ ++A D+     GL HL L HTSASLT+NEN D  VR D E F  + VP+ G++                                  +H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIWL EHR     R+++ TL G
Sbjct:   19 VTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGNY----------------------------------EHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137          
BLAST of DY305620 vs. ExPASy Swiss-Prot
Match: Y1880_SYNY3 (UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803) GN=sll1880 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.546e-18
Identity = 54/157 (34.39%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  324 TIYVWNQIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEVGSFGLWPVLSTSFPFHICSMLQ*LYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 794
            +++ +N  ++ + Q  S  K GL  +F+ HTSASL I EN D DV  D   F  ++VPE G                                   ++H+ EG DDMPAHI+S++   +  IPI +G+L +GTWQG++L EHR  P  R+V++ ++G
Sbjct:   23 SLHNFNSKIQAVVQH-SGVKTGLCTVFVRHTSASLIIQENADPDVLTDLAIFFAQLVPEDGR---------------------------------RYRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLGTWQGVFLWEHRQRPHQREVIVHVSG 145          
BLAST of DY305620 vs. ExPASy Swiss-Prot
Match: Y1081_METJA (UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii GN=MJ1081 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.461e-12
Identity = 52/162 (32.10%), Postives = 78/162 (48.15%), Query Frame = 3
Query:  312 ILQITIYVWNQIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEVGSFGLWPVLSTSFPFHICSMLQ*LYFVSLLQGRSASWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 794
            ++ IT Y+ + I +      S+ K G+A +++ HT+A +TINEN D  V+ D   FL+ ++P+                                    +W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQGI+  E  D P  R+  + + G
Sbjct:   20 LVDITPYIISAISE------SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK------------------------------------NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEF-DGPRRREFYVKIIG 136          
The following BLAST results are available for this feature:
BLAST of DY305620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YE72_SCHPO8.715e-2540.65UPF0047 protein C4A8.02c OS=Schizosaccharomyces po... [more]
YJBQ_SALTY2.147e-2341.83UPF0047 protein yjbQ OS=Salmonella typhimurium GN=... [more]
YJBQ_SALTI2.147e-2341.83UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ P... [more]
YJBQ_ECOLI1.391e-2238.96UPF0047 protein yjbQ OS=Escherichia coli (strain K... [more]
YJBQ_ECO571.391e-2238.96UPF0047 protein yjbQ OS=Escherichia coli O157:H7 G... [more]
Y1880_SYNY33.546e-1834.39UPF0047 protein sll1880 OS=Synechocystis sp. (stra... [more]
Y1081_METJA8.461e-1232.10UPF0047 protein MJ1081 OS=Methanocaldococcus janna... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1CG01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305620 ID=DY305620; Name=DY305620; organism=Citrus sinensis; type=EST; length=1278bp
GGTTTTCAGCTGTACAGGTGAAGCCACCGTCATCGCCACCGGTTCGTGTA
AAAGCCCTGTTCACAAAAAATCCGGGCTCGGGCACCCTAAAAAATTCCAA
TTCCAATACCAATCCCAATCCCAATCCCATGGCTTCTAATCCTAGGTGGG
CACAGAAGACTGTAACTCTCCCTCCACTTCGCCGTGGCTGTCATCTCATT
ACCCCTAAGGTAAAGTAAAGGAAAGTAAACTGTAAACCTAATCTCACTTA
CTTAAAAACCTTATTTATTTACTTTCAACCACCCCCCCCCCTCCCCGAAT
CCCACTTCTTCATTCTTCAAATTACAATTTATGTATGGAATCAGATAGTG
AAGGAAATCGCGCAAGACTTGTCAGAATTCAAGTGTGGCCTTGCGCATCT
CTTTTTGCTGCACACAAGTGCCTCTCTTACTATTAATGAGAATTATGACT
CTGATGTTCGGGATGACACCGAGACTTTCCTCAACAAAATAGTCCCAGAG
GTTGGTTCTTTTGGGCTTTGGCCAGTGCTTTCGACATCTTTTCCGTTTCA
CATTTGCTCAATGCTTCAGTAGCTTTATTTCGTGTCTTTATTACAGGGGA
GATCAGCTTCTTGGAAGCATACCCTCGAAGGCCCAGATGACATGCCAGCA
CATATTAAATCATCAATGTTTGGTTGCACACTCACGATTCCAATCACAGA
TGGGCAGCTAAACATGGGAACTTGGCAGGGAATATGGCTGTGCGAGCATC
GCGATGCACCCACTCCTCGCAAAGTCGTCATCACTCTCAATGGAATATGA
TTCAAATANGAGACGAGTGCTTTTGTTCTGTTACTTTTCTCCTTTTGACT
GAAATGTTTAATGGCGTGTAATGAATGAATGTAAACATAGCAAGAAAGAA
GTGTCTATGGTGTTTGTGGGAATGAAGTATGCAGTGAAGTACATAATTTT
CCTTAATGTAAGTAAAAAACCCAATCCCCCCTTCCTGAAATTAATTGCCC
TAAGGGTTGAATCAAAAAAAAAAAAAAAAAACCCAAAGGGGGGGCCCCGA
AACCAATTCCCCCCTAAATGAAATCTAATAAAATTTCCCGGGCCCTCCTT
TTTAAACCCCCCTTGAACGGGAGAAAAACCGGCGCTTAACCCCACTTAAA
TTCCTCTGGCAACCACCCTCCCCCTCTCCTCCCCCGTGGGGTAAAAAAGA
CAAAAAAAGAGCCCCCCCACGGACCTTCCCCCTTTCCCCCCAAACATGTT
GGCCCCCCCCCCCTGGTGAAAGGGGGGA
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