DY305556

Overview
NameDY305556
Unique NameDY305556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP1L_HUMAN (Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.009e-25
Identity = 58/155 (37.42%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  101 RFFCLFHVTNHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFGSL 565
            ++ C+ H    Y+    +  GPSM PT+    D++ AE +S     +  GDIV  +SP DP   + KR++G+EGD++    P +    H+ V                 P GHVW++GDNL  S DSR +GP+PYGLI G+ FF++WP + FG L
Sbjct:   18 QYGCIAHCAFEYVGGVVMCSGPSMEPTIQ-NSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYV-----------------PMGHVWLEGDNLQNSTDSRCYGPIPYGLIRGRIFFKIWPLSDFGFL 154          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP1L_MOUSE (Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.721e-25
Identity = 59/155 (38.06%), Postives = 86/155 (55.48%), Query Frame = 2
Query:  101 RFFCLFHVTNHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFGSL 565
            ++ C+ H    Y+    +  GPSM PT+    D++ AE +S     +  GDIV  +SP DP   + KR++G+EGD++    P +               VF    +  VP GHVW++GDNL  S DSR +GP+PYGLI G+ FF++WP + FG L
Sbjct:   18 QYGCIAHCAFEYVGGVVMCSGPSMEPTIQ-NSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILSTSPSD---------------VFKSRSY--VPTGHVWLEGDNLQNSTDSRYYGPIPYGLIRGRIFFKIWPFSDFGFL 154          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP1L_XENTR (Mitochondrial inner membrane protease subunit 1 OS=Xenopus tropicalis GN=immp1l PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.611e-23
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  101 RFFCLFHVTNHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFGSL 565
            ++ C+ H    Y+    +  GPSM PT+    DV+L + +S     +  GDI+  +SP  P+  + KR++G+EGD+V    P      HT V                 PKGHVW++GDNL  S DSR +GPVPY LI G+   RVWP  SFG L
Sbjct:   18 QYGCIAHCAFEYIGEVVICSGPSMEPTIR-NYDVLLCDNLSRHFFSIHKGDIIVAKSPDKPSVNICKRVIGLEGDKVCMSSPSALLKRHTYV-----------------PKGHVWLEGDNLDNSTDSRSYGPVPYALIRGRICLRVWPLESFGPL 154          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP1_SCHPO (Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe GN=imp1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.364e-19
Identity = 54/143 (37.76%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  119 HVTNHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHRVGR-VGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWP 544
            H  + YL+   +  GPSM+PTLN  G+ +L + +  R  R    GD+V    P D  + V KRI+G+ GD + Y  P + +   T+                  P GHVW+ GDN+  S DSR +GPVP GLI+ K   RVWP
Sbjct:   19 HQIHEYLFQVQMTSGPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRIIGMPGDTI-YVDPTSSNKKITI------------------PLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAKVIARVWP 142          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP1_YEAST (Mitochondrial inner membrane protease subunit 1 OS=Saccharomyces cerevisiae GN=IMP1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.118e-16
Identity = 55/152 (36.18%), Postives = 76/152 (50.00%), Query Frame = 2
Query:   80 SQTLTFA-RFFCLFHVTNHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*---VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGK 523
            S+T ++A R  C  H+ + Y +  T   G SMLPTL+ T D +           +  GD +    P DPN  + KR+ G+ GD V            + + N + DV+   E FG    VP+GHVW+ GDNL  S DSR +  +P GLI GK
Sbjct:   10 SKTFSYAIRSLCFLHIIHMYAYEFTETRGESMLPTLSATNDYVHVLKNFQNGRGIKMGDCIVALKPTDPNHRICKRVTGMPGDLVLVDP--------STIVNYVGDVLVDEERFGTYIKVPEGHVWVTGDNLSHSLDSRTYNALPMGLIMGK 153          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP2L_DANRE (Mitochondrial inner membrane protease subunit 2 OS=Danio rerio GN=immp2l PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.786e-14
Identity = 51/136 (37.50%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  155 VFGPSMLPTLNLTG----DVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPN 550
            V G SM P+LN  G    DV+L    S R   V  GDIV V SP +P + + KR++G+EGD +     +N                     +  VP GH+WI+GD+   S DS  FGPV  GL+ G+A   +WPP+
Sbjct:   38 VEGASMQPSLNPDGESSPDVVLLNRWSVRNYHVQRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKN--------------------RYVRVPDGHLWIEGDHHGHSFDSNAFGPVSLGLVHGRASHIIWPPS 153          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP2_YEAST (Mitochondrial inner membrane protease subunit 2 OS=Saccharomyces cerevisiae GN=IMP2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.578e-13
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 2
Query:   65 AKEALSQTLTFARFFCLFHVTNHYLWSPTLVFGPSMLPTLN------LTGDVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVT----YFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFGS 562
            +K  L  TL    +  +    N+ +     V G SM PTLN       T  V+L ++       +   DI+  ++P +P K+  KR+ G+  D +     Y KP+                         +P+GH+W++GDN + S DS  FGP+  GL+ GKA   VWPP+ +G+
Sbjct:    7 SKRFLRNTLIAISWVPVLLTINNNVVHIAQVKGTSMQPTLNPQTETLATDWVLLWKFGVKNPSNLSRDDIILFKAPTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVN-----------------------LPRGHIWVEGDNYFHSIDSNTFGPISSGLVIGKAITIVWPPSRWGT 159          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP2L_HUMAN (Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens GN=IMMP2L PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.671e-12
Identity = 48/141 (34.04%), Postives = 68/141 (48.23%), Query Frame = 2
Query:  155 VFGPSMLPTLNLTG----DVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFGSL 565
            V G SM P+LN  G    DV+L  +   R   V  GDIV + SP +P + + KR++ +EGD V     +N                     +  VP+GH+W++GD+   S DS  FGPV  GL+   A   +WPP  +  L
Sbjct:   39 VEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKN--------------------RYVKVPRGHIWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKL 159          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP2L_BOVIN (Mitochondrial inner membrane protease subunit 2 OS=Bos taurus GN=IMMP2L PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.671e-12
Identity = 48/141 (34.04%), Postives = 68/141 (48.23%), Query Frame = 2
Query:  155 VFGPSMLPTLNLTG----DVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFGSL 565
            V G SM P+LN  G    DV+L  +   R   V  GDIV + SP +P + + KR++ +EGD V     +N                     +  VP+GH+W++GD+   S DS  FGPV  GL+   A   +WPP  +  L
Sbjct:   39 VEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKN--------------------RYVKVPRGHIWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPKRWQKL 159          
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP2L_MOUSE (Mitochondrial inner membrane protease subunit 2 OS=Mus musculus GN=Immp2l PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.851e-12
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  155 VFGPSMLPTLNLTG----DVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFGSL 565
            V G SM P+LN  G    DV+L  +   R   V  GDIV + SP +P + + KR++ +EGD V     +N          RL  V          P+GH+W++GD+   S DS  FGPV  GL+   A   +WPP  +  L
Sbjct:   39 VEGSSMQPSLNPGGSQSSDVVLLNHWKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKN----------RLVKV----------PRGHMWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQRL 159          
The following BLAST results are available for this feature:
BLAST of DY305556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IMP1L_HUMAN1.009e-2537.42Mitochondrial inner membrane protease subunit 1 OS... [more]
IMP1L_MOUSE1.721e-2538.06Mitochondrial inner membrane protease subunit 1 OS... [more]
IMP1L_XENTR1.611e-2338.71Mitochondrial inner membrane protease subunit 1 OS... [more]
IMP1_SCHPO5.364e-1937.76Mitochondrial inner membrane protease subunit 1 OS... [more]
IMP1_YEAST1.118e-1636.18Mitochondrial inner membrane protease subunit 1 OS... [more]
IMP2L_DANRE1.786e-1437.50Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2_YEAST2.578e-1328.98Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2L_HUMAN1.671e-1234.04Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2L_BOVIN1.671e-1234.04Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2L_MOUSE2.851e-1235.46Mitochondrial inner membrane protease subunit 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BG03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305556 ID=DY305556; Name=DY305556; organism=Citrus sinensis; type=EST; length=1258bp
GCAGACACAGGAACAGACGCAGGGAAAGAAACGAGAGCGGGAGATGAGAA
GATGGGGACTGTTAGCAAAAGAAGCCCTAAGTCAAACACTAACGTTCGCC
AGATTCTTCTGTTTATTCCACGTCACCAACCACTACCTCTGGTCTCCTAC
CCTGGTGTTCGGTCCTAGCATGCTCCCGACCTTGAATCTAACCGGCGACG
TGATTCTTGCGGAATACGTGTCCCACAGAGTGGGAAGAGTGGGCCCTGGT
GATATCGTCTTCGTTCGTTCACCTGTCGACCCGAATAAGATTGTGACTAA
GCGCATTGTCGGCGTCGAAGGCGATAGAGTCACTTACTTCAAACCCAGGA
ATGGAGACACGTGTCACACTGTCGTGTTCAATCGTTTGTGTGATGTTGTC
TTTGGAATTGAAATGTTTGGTTAGGTCCCAAAGGGGCATGTTTGGATACA
AGGGGATAACCTTTATGCTTCCAGGGATTCGCGGCAATTTGGGCCTGTTC
CGTATGGTCTTATTGAAGGGAAAGCATTTTTCAGGGTGTGGCCACCTAAT
AGCTTTGGATCACTGGGATAATGAACGCTGCAATAGTTACTGATTGAAGT
TGTTTCCATACATTTGATTCGGTCTTCTTCAAAGTGGAGGAGAGCATTTT
CTTGATATAATAATTTATACAGGAATTCTTCAACCAATTGTCAGCTTCTC
TTTCTTCTGCTCTTGATATCCATCAGTTGTATACATTCAATTAAAATTGA
ACTCTTCTTAATGTTTTGGATTTGCAGGAATTGCTTTCATTTGAATTGAA
GAATGATTGCAAGTGTGTCAATTACATAAATACTCCTTAAATGGCGCCGT
GCTCCTTTTGTTCTTATACATCAACGGGAAATTTTTATTTTTTATTTTAT
TTTAGCTCTATTAATTTCTAACAGGAAATTGTCTTGGTTATTCATTAAAT
TTTCCCTCATTTTCAAAAATTTTACTTTTTTCGGTTTTGGTGAATTTAAA
AACCAATCAAAAAAAAAAAAAAAAATTTTAAATTTTCCCCTAAAAAAAAA
AAAAAAAAACCCGGGGGGGGGGGCCGGGGGAACCAATTCCCCCTTAATAG
TGGGCGTTATATAAAATTTTCGGGGGCCGGTTGTTTTTTTAAAACGCTTG
GGAGGGGGGGAAAAAAGGCGGGGGGGGTACCACAAAATTTAATCCCCCCG
CTTGCCCACTAAACTCCCCCCCCTTCTCTCCCTCCCCCCGGGGGGCTGTA
AATAACAA
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