DY305520

Overview
NameDY305520
Unique NameDY305520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11053 contig Csv1_Contig11053:639..1512. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 7.583e-29
Identity = 74/180 (41.11%), Postives = 113/180 (62.78%), Query Frame = 1
Query:    7 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 537
            G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +  +  + S +E +  + ++D  +S + ++ +  I+ CFS  TV EII++ +    ++G+ +    LK + K SPT LKITLR + EG  ++L E L  E+RL+   +R     D +EG+RA+ I+KD +PKW P
Sbjct:  189 GKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQ----QDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMR---GHDFHEGVRAVLIDKDQSPKWKP 361          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.384e-28
Identity = 74/209 (35.41%), Postives = 115/209 (55.02%), Query Frame = 1
Query:    7 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE-------CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFG-EDLEL 609
            G +G  LALTG RL G++++ AG+ATHFV S KLPELEK LI L +  +  +   +  +    ++D +    K+ ++DE        FS  ++ EI++  +    ++G+ +    L+ + K SPT LK+TLR +REG   SL +    E+RL+   +R     D YEG+RA+ I+KD +P+W P              F+P G  DL+L
Sbjct:  188 GKIGHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKIDQE----KEFVLDEHMERINSIFSANSMEEIVQKLK----QDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDVFTMEYRLSQACMR---GHDFYEGVRAVLIDKDQSPRWKPAALEEVSDEFVDNCFKPLGNNDLKL 385          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.439e-27
Identity = 73/182 (40.11%), Postives = 104/182 (57.14%), Query Frame = 1
Query:    7 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQS-IIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPT 543
            G LG FLALTG RL G+++   G+ATHFV SEK+  LEK L+ L +     V   ++ + E   LD +   VL +Q+  ID  FS  +V EI+++ +    K+G+ +     + L K SPT LK+T R + EG   SL E    E+RL+   +      D YEG+RA+ I+KD +PKW P T
Sbjct:  185 GKLGLFLALTGFRLKGRDVQRVGVATHFVQSEKIESLEKDLVDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSVEEIVENLK----KDGSAFALKQAETLAKMSPTSLKLTFRQIEEGARMSLQEVFMMEYRLSQACMN---GHDFYEGVRAVLIDKDQSPKWKPST 359          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.581e-26
Identity = 71/180 (39.44%), Postives = 108/180 (60.00%), Query Frame = 1
Query:    7 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 537
            G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +     V   +E +    ++D  +S++ ++ +  I+ CFS  TV +II++      ++G+ +    +K + K SPT LKITLR + EG  ++L E L  E+R+T   +      D +EG+RA+ I+KD  PKW P
Sbjct:  188 GKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLR----QDGSPFAIEQMKVINKMSPTSLKITLRQLMEGSSKTLQEVLIMEYRITQACME---GHDFHEGVRAVLIDKDQTPKWKP 360          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 70/180 (38.89%), Postives = 107/180 (59.44%), Query Frame = 1
Query:    7 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL-DGQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 537
            G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +     V   +E +    ++   +S++ ++ +  I+ CFS  TV +I+++      ++G+ +    +K + K SPT LKITLR + EG  ++L E L  E+RLT   +      D +EG+RA+ I+KD  PKW P
Sbjct:  188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLR----QDGSPFAMEQIKVINKMSPTSLKITLRQLMEGSTKTLQEVLTMEYRLTQACME---GHDFHEGVRAVLIDKDQTPKWKP 360          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.643e-25
Identity = 68/180 (37.78%), Postives = 104/180 (57.78%), Query Frame = 1
Query:    7 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC---FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 537
            G LG FLALTG RL G+++  AG+ATHFV  EKL  LE+ L+ L +  +  +   +E +    + D       +  +D+    FS  TV +I+ + +    ++G+ +    LK +KK SPT LKITLR + EG  ++L E L  E+RL+   ++     D +EG+RA+ I+KD +PKW P
Sbjct:  189 GKLGYFLALTGFRLKGRDVYTAGIATHFVDFEKLGMLEEDLLALKSPSKENIADVLETYHAKSKTDQDKPFILEEHMDKINSWFSANTVEQIVDNLQ----QDGSSFALEQLKVIKKMSPTSLKITLRQLMEGSSKTLPEVLIMEYRLSQACMK---GHDFHEGVRAVLIDKDQSPKWKP 361          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.297e-24
Identity = 64/205 (31.22%), Postives = 104/205 (50.73%), Query Frame = 1
Query:    1 VPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGEDLELQ 612
            +P + G +LALTG++L G  +  AG+ATHFV +E +  LEK +          + S + ++ +  +       +    I+  F K +V EI +  E     E + W    LK LK  SP+ L +    +++G +  SLA+CL+ EFR++ + L      D +EG+RAL ++KD  PKW PP+            F+P   + EL+
Sbjct:  182 LPNNYGMYLALTGSKLKGNNVYLAGVATHFVSNEHIQALEKEIEECENPTSQTINSILTKYHDKSKSTSNEYNDNLGDIERIFGKNSVKEIFEQLEL---LENSEWAKQTLKTLKSVSPSSLMVVFEQMKQGAKLPSLAKCLEMEFRISQHFLE---KPDFFEGVRALLVDKDKNPKWLPPSIDQIDQTLVNSYFKPLSNNKELK 380          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.218e-23
Identity = 73/205 (35.61%), Postives = 105/205 (51.22%), Query Frame = 1
Query:    7 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVL-NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFG-EDLEL 609
            G LG +LALTG RL G ++  AG+ATHFV SEKL  LE+ L+ + +  +  V   ++ + +      D   VL      I+  FS  TV EI+++ +     +G+ +    L+ L   SPT LKIT R ++EG   SL E L  E+RL+   +      D YEG+RA+ I+KD   KW P +            F   G  DL+L
Sbjct:  188 GKLGLYLALTGFRLKGSDVQKAGIATHFVESEKLSSLEQDLVAMKSPSKENVADVLDSYQKKSYAAQDKPFVLAENMDKINSLFSGNTVEEIMENLKC----DGSSFAMKQLQTLSTMSPTSLKITFRQLKEGASMSLQEVLTMEYRLSQACMN---GHDFYEGVRAVLIDKDQKAKWKPESLEEVTEDYIDSCFTSLGSRDLKL 385          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.121e-23
Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 1
Query:    1 VPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVLNKQ-SIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 537
            +PG LG +LALTG RL G ++  AG+ATHFV SEK+P LE+ L+ +    +  V   ++ +        D   VL +    I+  FS  +V  II++       +G+ +    L+ L   SPT LKIT R ++EG   SL E L  E+RL+   ++     D YEG+RA+ I+K+   KW+P
Sbjct:  186 LPGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKIPSLEQDLVAMKCPSKENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSASSVEAIIENLRC----DGSSFALKQLQTLSTMSPTSLKITFRQLKEGSSMSLQEVLTMEYRLSQACMKGY---DFYEGVRAVLIDKNQNAKWNP 360          
BLAST of DY305520 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.696e-17
Identity = 53/180 (29.44%), Postives = 87/180 (48.33%), Query Frame = 1
Query:    1 VPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL-NKQSIIDECFSKETVAEIIKSFEAEAGKEG--NGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 531
            +PG+ G +L LT   + G + +  G+ATHFVP    P LE RL  LNT D   + + I EF+E       +   +   +I++CF K    +II++ +  A        +    +K L   SPT + +T R ++   + S++E    +  ++  +L+     D  EG+ A  I K   PKW
Sbjct:  207 LPGYFGTYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWSISEAFYYDHIVSYYMLK---QPDFVEGVNAQLITKTKNPKW 383          
The following BLAST results are available for this feature:
BLAST of DY305520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HIBCH_HUMAN7.583e-2941.113-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_CHICK8.384e-2835.413-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE2.439e-2740.113-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE1.581e-2639.443-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT4.601e-2638.893-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN6.643e-2537.783-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI3.297e-2431.223-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA6.218e-2335.613-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR8.121e-2336.813-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO8.696e-1729.443-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BB07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305520 ID=DY305520; Name=DY305520; organism=Citrus sinensis; type=EST; length=874bp
GTCCCTGGACATTTAGGGGAATTCCTGGCCTTAACTGGGGCAAGGCTAAA
TGGCAAGGAACTGGTTGCAGCTGGGCTAGCTACCCATTTTGTCCCTTCTG
AGAAATTGCCCGAGCTAGAAAAGCGTCTGATAGGCTTAAACACTGGTGAT
GAAATTGCAGTCAAATCTGCAATTGAAGAGTTCTCTGAGGATGTTCAGCT
TGATGGACAAAGTGTCTTAAATAAGCAGTCTATAATTGATGAGTGTTTCT
CAAAGGAGACTGTAGCCGAGATTATAAAATCATTTGAAGCAGAGGCAGGC
AAAGAAGGAAATGGATGGATAGGTCCAGTGCTGAAGGGATTAAAGAAGTC
ATCGCCAACAGGATTGAAAATAACACTAAGATCGGTGCGTGAAGGCAGAG
AGCAATCACTGGCTGAATGTCTGAAGAAGGAATTTAGGCTGACAATAAAC
ATACTACGAGCAATAATATCTGCAGATATCTATGAGGGTATTAGAGCTCT
CACCATTGAGAAGGATAATGCTCCAAAGTGGGATCCACCGACGCTTGATA
AAGTTGACGATGACAAAGTGGATCTGGTTTTCCAGCCATTTGGAGAGGAT
TTAGAGCTCCAGATTCCAGAGAATGAAAACTGCAGGTGGGATGGAAAATA
TGAGAATTCAGCATATGCAACTTCACAGGTGACAGCCGAAGCTAAATAGA
TTTTTGGTCTGCATGTTTCTACTGGCGTTCTATGTTATGAACACCAAGTA
TGTAATATCATCATGGTACTAGATGCTTTCATTTGAAATAAAAGTCCCTA
GTAGTTACACTCAACAATAATCAGAACTGAAGTTTCTTGGGATAAAAAAA
TTAACTGCCCCGTTCGTTCCGTCC
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