EY671322

Overview
NameEY671322
Unique NameEY671322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.750e-77
Identity = 133/177 (75.14%), Postives = 151/177 (85.31%), Query Frame = 1
Query:   43 ISSATVATANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 573
            ISS+ +AT NR +   AS+ APFTGLKS+ AFP T K NND +S+ SNGGRVQCMKVWPP GLKK ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SP YYDGRYWTMWKLPM+GCTD+ Q +KE GE +KEYP++F+R+IGFDN RQVQCISFI AKPPGV
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.652e-77
Identity = 139/180 (77.22%), Postives = 155/180 (86.11%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 567
            MASSMISSATVAT +RA+ A A+MVAPFTGLKS++AFPAT K+NNDITS+ASNGGRVQCMKVWPP GL+K ETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE+++SP YYDGRYW MWKLPM+GCTDATQ L E  E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.135e-76
Identity = 139/182 (76.37%), Postives = 155/182 (85.16%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 573
            MA SMISSATVA  +RAS A +SMVAPFT LKS+SAFP T KTNNDITSIASNGGRVQCM+VWPP GLKK ETLSYLPPLS E L KE++YL+R   IPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GC D++Q LKE  E +K YP +F+RIIGFDNKRQVQ ISFIA KPPGV
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.650e-75
Identity = 138/183 (75.41%), Postives = 155/183 (84.70%), Query Frame = 1
Query:   28 MASSMISSATVAT--ANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 570
            MASSMISS TVAT  A+R + A A MVAPF GLKSSSAFP T K+N DITSIASNGGRVQCM+VWPP GLKK ETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SP YYDGRYWTMWKLPM+GCTD++Q LKE  E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.062e-74
Identity = 138/183 (75.41%), Postives = 155/183 (84.70%), Query Frame = 1
Query:   28 MASSMISSATVAT--ANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 570
            MASSMISS TVAT  A+R + A A MVAPFTGLKSSSA P T K+N DITSIASNGGRVQCM+VWPP GLKK ETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SP YYDGRYWTMWKLPM+GCTD++Q LKE  E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.271e-74
Identity = 129/176 (73.30%), Postives = 149/176 (84.66%), Query Frame = 1
Query:   37 SMISSATVATANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 564
            ++ISSA V T NRAS A A++VAPFTGLKSS+ FP T KTNNDITSIASNGGRV CM+VWPP G KK ETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SP YYDGRYWTMW+LP++G TD++Q LKE  + + EYP SF+RIIGFDN RQVQCISFIA  P
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.990e-74
Identity = 131/181 (72.38%), Postives = 148/181 (81.77%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 570
            MASSM+S+ATVA+ NR S A A+MVAPFTGLKS+  FP T KTN+DITSI SNGG+VQCMKVWP  G+KK ETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G VYREH + P YYDGRYWTMWKLPM+GCTDA Q LKE  E+ K +P  + RIIGFDN RQVQCISF+A KPPG
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.533e-73
Identity = 133/181 (73.48%), Postives = 148/181 (81.77%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 570
            MASSM+S+A VA  NRAS A ASMVAPFTGLKS+SAFP T KT  DITSIASNGGRVQCM+VWPP G K  ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+H+SP YYDGRYWTMWKLPM+GCTDA Q L+E  E+ K YP  + RIIGFDN RQVQCISF+A KP G
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.003e-73
Identity = 135/181 (74.59%), Postives = 147/181 (81.22%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATNKTNNDITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 570
            MASSMISS  V T NRA    A MVAPFTGLKS + FP T KTNNDITSIASNGGRVQCM+VWPP G KK ETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GCTDA+Q LKE  E +  YP+ F+RIIGFDN RQVQCISFIA KPPG
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of EY671322 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.462e-73
Identity = 131/182 (71.98%), Postives = 155/182 (85.16%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAHASMVAPFTGLKSSSAFPATNKTNN-DITSIASNGGRVQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSP*YYDGRYWTMWKLPMYGCTDATQDLKEGGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 570
            MASS++SSA VAT  R+++A ASMVAPFTGLKS+++FP T K NN DITS+ASNGGRV+CM+VWPP  +KK ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSP YYDGRYWTMWKLPM+GCTDATQ L E  E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
The following BLAST results are available for this feature:
BLAST of EY671322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_LACSA1.750e-7775.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR6.652e-7777.22Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE1.135e-7676.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY3.650e-7575.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.062e-7475.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA5.271e-7473.30Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES8.990e-7472.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR1.533e-7373.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN2.003e-7374.59Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_SOLTU4.462e-7371.98Ribulose bisphosphate carboxylase small chain 3, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-098-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY671322 ID=EY671322; Name=EY671322; organism=Citrus sinensis; type=EST; length=811bp
CAAAGCTACAAGAAAGACCAAGTACCAATGGCTTCCTCAATGATCTCATC
GGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCATGCCAGCATGG
TCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAT
AAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCA
ATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGATCGAGACTCTCT
CATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTAC
CTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGG
ATGGGTGTACCGTGAGCACCACAAGTCACCATGATACTACGATGGACGCT
ACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAG
GATTTGAAAGAGGGTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGT
CCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCA
TTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACC
ACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCA
TTCGATCAATGGGGGGTCGGGTTTGCGTTTAATTTGTAATTAGGCTGGTG
GTGCTGGCGGCTCAAACTTTTTTTTGGGTTTCTCCCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGGGGGGGCGGTCCTAAAGGAACCCAATTTAAGT
ACGGCGGGCTG
back to top