EY671259

Overview
NameEY671259
Unique NameEY671259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.472e-42
Identity = 83/139 (59.71%), Postives = 97/139 (69.78%), Query Frame = 2
Query:  227 KTGGQISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEKIS*GIQGGCS---HSVWFWL 634
            K G +++AKFELKPPPYPLN LEP MS+ TLEFHWGKHH+ YV+NL KQ+VGTEL DGKSLE++++ SYNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGSF K     +   +    S W WL
Sbjct:   18 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTEL-DGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWL 155          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 155.606 bits (392), Expect = 3.651e-40
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  242 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEK 583
            ++A + LKPPP+ L+ALEPHMSK TLEFHWGKHHRAYVDNL KQ++GTEL +GK LE ++ ++YN GDLLPAFNNAAQAWNH+FFW                 L+ERDF S+EK
Sbjct:    7 VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEK 119          

HSP 2 Score: 31.187 bits (69), Expect = 3.651e-40
Identity = 16/36 (44.44%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  603 AGAATQFGSGWAWAG*QAQ--KTTDGGNGGKPLSIG 704
            A AATQFG+GWAW     +  K     N   PL +G
Sbjct:  126 AAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLVLG 161          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.290e-38
Identity = 90/194 (46.39%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  251 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEKIS*GIQGGCS---HSVWFWLGLGWITSPKNN*WG*WGETPFHRRRAKAFLMGKTPKAGKSSG*GITPPSLTMEEGKPG*YLPF 823
            KFEL+PPPYP++ALEPHMS  T EFHWGKHHRAYVDNLNKQI GTEL DGK+LED+++ +YNKG  LPAFNNAAQAWNH FFW                 LI RDFGS++      +   +    S W WL                     ++   K   + KTP A      G T P LT++  +   YL F
Sbjct:    1 KFELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTEL-DGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLA--------------------YKPEEKKLALVKTPNAENPLVLGYT-PLLTIDVWEHAYYLDF 172          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.430e-22
Identity = 57/131 (43.51%), Postives = 71/131 (54.20%), Query Frame = 2
Query:  254 FELKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEKIS*GIQGGCS---HSVWFWL 634
            F  +P PY  NALE + M  +T E+H+GKHH+AYVDNLNK   GTEL D KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGSF+K+        +    S W WL
Sbjct:    3 FVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELAD-KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWL 132          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.117e-22
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  254 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSF 577
            F L   PY L+AL PH+SK+TLE+H+GKHH  YV NLNK I GTE  +  +LE++++ +  KG +   FNNAAQ WNH F+W                  I + FGSF
Sbjct:    3 FTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEF-ESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGSF 104          

HSP 2 Score: 30.0314 bits (66), Expect = 8.117e-22
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 3
Query:  609 AATQFGSGWAW-----AG*QAQKTTDGGNGGKPLSIG 704
            AAT FGSGWAW     +G  A K  +  N G P++ G
Sbjct:  115 AATTFGSGWAWLVQDQSG--ALKIINTSNAGTPMTEG 149          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 5.117e-21
Identity = 59/130 (45.38%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  254 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEKIS*GI---QGGCSHSVWFWL 634
            FEL P PY  NALEPH+S +TLE+H  KHH  YV NLN  I GTE  +GKSLE++V +S   G +   FNNAAQ WNH F+W                  I   FGSF+K          G   S W WL
Sbjct:    3 FELPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGTEF-EGKSLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWL 126          

HSP 2 Score: 23.0978 bits (48), Expect = 5.117e-21
Identity = 13/36 (36.11%), Postives = 15/36 (41.67%), Query Frame = 3
Query:  621 FGSGWAWAG*QAQKTTDGG-------NGGKPLSIGE 707
            FGSGW W      K  DG          G PL+ G+
Sbjct:  119 FGSGWGW----LVKKADGSLALASTIGAGNPLTSGD 150          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 4.194e-20
Identity = 57/130 (43.85%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  254 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEKIS*GI---QGGCSHSVWFWL 634
            FEL P PY  +AL+PH+SK+TLEFH  KHH  YV NLN  + GTE  +GK+LE++V  S   G +   FNNAAQ WNH F+W                  I   FGSF+K          G   S W WL
Sbjct:    3 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWL 126          

HSP 2 Score: 21.9422 bits (45), Expect = 4.194e-20
Identity = 13/36 (36.11%), Postives = 15/36 (41.67%), Query Frame = 3
Query:  621 FGSGWAWAG*QAQKTTDGG-------NGGKPLSIGE 707
            FGSGW W      K  DG          G PL+ G+
Sbjct:  119 FGSGWGW----LVKKADGSLALASTIGAGCPLTSGD 150          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 7.095e-20
Identity = 56/130 (43.08%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  254 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEKIS*GI---QGGCSHSVWFWL 634
            FEL P PY  +AL+PH+SK+TLE+H  KHH  YV NLN  + GTE  +GK+LE++V +S   G +   FNNAAQ WNH F+W                  I   FGSF+K          G   S W WL
Sbjct:    3 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWL 126          

HSP 2 Score: 21.9422 bits (45), Expect = 7.095e-20
Identity = 13/36 (36.11%), Postives = 15/36 (41.67%), Query Frame = 3
Query:  621 FGSGWAWAG*QAQKTTDGG-------NGGKPLSIGE 707
            FGSGW W      K  DG          G PL+ G+
Sbjct:  119 FGSGWGW----LVKKADGSLALASTIGAGCPLTSGD 150          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.341e-19
Identity = 55/126 (43.65%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  272 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEKIS*GI-QGGCSH--SVWFWLGL 640
            PY   ALEP +SK TLEFH  KHH AYV+N N  + GT+L D +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGSF+       Q G +   S W WL L
Sbjct:    9 PYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDL-DNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVL 133          
BLAST of EY671259 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.341e-19
Identity = 53/130 (40.77%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  254 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSFEKIS*GIQGGCSH---SVWFWL 634
            FEL   P+ +NALEPH+S++TLE+H+GKHH  YV  LN  + GTEL + KSLE+++  S         FNNAAQ WNH F+W                  IE+ FGSF +          +   S W WL
Sbjct:    2 FELPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVEGTELAE-KSLEEIIKTSTG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWL 125          
The following BLAST results are available for this feature:
BLAST of EY671259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
SODF_SOYBN1.472e-4259.71Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_ARATH3.651e-4062.28Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_NICPL1.290e-3846.39Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ANASP6.430e-2243.51Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_LEGPH8.117e-2245.37Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_PSEAE5.117e-2145.38Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_PSEPU4.194e-2043.85Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_PSEPK7.095e-2043.08Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_SYNY31.341e-1943.65Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PHOLE1.341e-1940.77Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-098-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY671259 ID=EY671259; Name=EY671259; organism=Citrus sinensis; type=EST; length=836bp
CACTAACTTCGTACCACAACACAAATCAAGAGTCAACCCAGTTCACACAC
AGAGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATA
TAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTACTCCAACAATTTG
GTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTATTGCCTTTTCATT
GGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCAAATTTCTGCG
AAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACA
TATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTT
ATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTCGGTGATGGA
AAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCT
TCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGG
AATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGA
CTGATTGAAAGGGATTTTGGTTCTTTTGAAAAAATTTCTTGAGGAATTCA
AGGCGGGTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGGCTGGATAA
CAAGCCCAAAAAACAACTGATGGGGGTAATGGGGGGAAACCCCTTTCCAT
CGGAGAAGGGCAAAAGCCTTTTTAATGGGGAAAACTCCAAAGGCGGGCAA
ATCCTCTGGCTAGGGAATAACCCCCCCCTCCTTAACAATGGAGGAAGGGA
AACCTGGCTAATACCTCCCATTTTCAAAAATCAAAG
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