DY257540

Overview
NameDY257540
Unique NameDY257540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1118
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257540_ssr146 microsatellite DY257540_ssr146:146..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257540 vs. ExPASy Swiss-Prot
Match: RTC2_YEAST (Protein RTC2 OS=Saccharomyces cerevisiae GN=RTC2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.420e-12
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  321 GLTSLVCWGVAEIPQIITNFRTKSSHGVSLLFLLTWVAGDIFNLTGCLLEPATLPTQFYTALLYTISTVVLVLQGVYYN 557
            G  S+ CW V  +PQI  NFR +S+ G+SLLF++ W+ GDIFN+ G +++   LPT    A  YT++ ++L++Q ++Y+
Sbjct:   18 GSISICCWIVVFVPQIYENFRRQSAEGLSLLFIVLWLLGDIFNVMGAMMQ-NLLPTMIILAAYYTLADLILLIQCMWYD 95          
BLAST of DY257540 vs. ExPASy Swiss-Prot
Match: YO092_YEAST (Uncharacterized membrane protein YOL092W OS=Saccharomyces cerevisiae GN=YOL092W PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.202e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  321 GLTSLVCWGVAEIPQIITNFRTKSSHGVSLLFLLTWVAGDIFNLTGCLLEPATLPTQFYTALLYTISTVVLVLQGVYYNH 560
            G  S+ CW +  +PQI  NF  KSS G+SLLF++ W+AGD+FNL G +++   L T    A  YT++ ++L+ Q ++Y++
Sbjct:   18 GSISISCWIIVFVPQIYENFYRKSSDGLSLLFVVLWLAGDVFNLMGAVMQ-HLLSTMIILAAYYTVADIILLGQCLWYDN 96          
BLAST of DY257540 vs. ExPASy Swiss-Prot
Match: PQLC2_HUMAN (PQ-loop repeat-containing protein 2 OS=Homo sapiens GN=PQLC2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.498e-11
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  246 GCVGWVERYLKDCLCNVKDEFSFGFGLTSLVCWGVAEIPQIITNFRT-KSSHGVSLLFLLTWVAGDIFNLTGCLLEPATLPTQFYTALLYTISTVVLVLQGVYY 554
            G + W+   L +C  +  DE S G GL S++C+  +  PQ I  ++T      +SL FLL W+ GD  NL G  L    LP Q YTA+ Y ++ +V++    YY
Sbjct:   17 GSIQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLAD-QLPLQTYTAVYYVLADLVMLTLYFYY 119          
BLAST of DY257540 vs. ExPASy Swiss-Prot
Match: PQLC2_MOUSE (PQ-loop repeat-containing protein 2 OS=Mus musculus GN=Pqlc2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.793e-11
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = 3
Query:  195 W*GQGMSSINYCVKERKGCVGWVERYLKDCLCNVKDEFSFGFGLTSLVCWGVAEIPQIITNFRT-KSSHGVSLLFLLTWVAGDIFNLTGCLLEPATLPTQFYTALLYTISTVVLVLQGVYYNHIFKR 572
            W   G S+ + C     G V W+     +C  +  DE S G GL S++C+  +  PQ I   +T      +SL FLL W+ GD  NL G  L    LP Q YTA+ Y ++ ++++   +Y+++ FK+
Sbjct:    3 WRTLGASNFSTCPN---GSVQWIWDVFGECAQDGWDEASVGLGLVSILCFAASTFPQYIKACKTGNMDQALSLWFLLGWIGGDSCNLIGSFLAD-QLPLQTYTAVYYVLADLMMLT--LYFHYKFKK 123          
The following BLAST results are available for this feature:
BLAST of DY257540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RTC2_YEAST1.420e-1241.77Protein RTC2 OS=Saccharomyces cerevisiae GN=RTC2 P... [more]
YO092_YEAST1.202e-1141.25Uncharacterized membrane protein YOL092W OS=Saccha... [more]
PQLC2_HUMAN3.498e-1136.54PQ-loop repeat-containing protein 2 OS=Homo sapien... [more]
PQLC2_MOUSE7.793e-1133.07PQ-loop repeat-containing protein 2 OS=Mus musculu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3AD07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257540 ID=DY257540; Name=DY257540; organism=Citrus sinensis; type=EST; length=1118bp
GAGTCTCAACAACACAAACAATCTTTCCGCTGTACAAGTAAAACGCCCTC
TCTGTTTCTTTAATTTTCTTGTTTTAAAAATAACCAGAAATATATCTACA
TATAATTAAGAGAACACTTTTTATTAATTCCATCCACCAGATTTTGAGAG
AGAGAGAGAGAGAAAGTGAGAACAATTAAAGGTGTTGGTGGTAGTGGTGA
GGGCAAGGGATGTCGAGTATAAATTATTGTGTGAAGGAGAGGAAAGGGTG
TGTGGGCTGGGTTGAAAGGTATTTAAAAGATTGCCTTTGCAACGTCAAGG
ATGAATTTTCATTTGGATTCGGTCTCACCAGTCTCGTCTGTTGGGGAGTT
GCGGAAATCCCTCAAATCATAACCAACTTTCGAACCAAGTCCAGCCACGG
CGTCTCGCTCCTCTTCCTCCTCACTTGGGTTGCTGGAGATATTTTTAATT
TGACGGGTTGTCTTCTGGAACCGGCTACGCTGCCTACCCAGTTCTACACG
GCTCTGCTCTACACCATAAGTACTGTAGTGTTAGTGCTGCAAGGTGTATA
CTACAATCATATTTTCAAGAGATTGAAAGGCCGACACACTAAAGCTAAAC
GAAGGGAGGAGGATGAGAAAAAACCTTTGGCACCTAAGTCAGGTGACGCG
GCCATTCCCATTCCCAAGGCATCAGTAAAATCATCTCCTCGAAGAGAGTA
TTACTACACGTCAGCAAGATCGTTAGCAAGCAGTGGCACTCCTCCATTTC
CAACGTTTCTCAGAAGCACCGAAAGTGGGGCTTCACCTTTGGAACTGGGA
CACAATTCCTCGTCGGATGATGAAGCGGCAGCAGCGGTTCCCCACCCTTT
CTCCTTCTGGAAACCACAAACTAACCCAGCCAAGGCCCTTCCCAAAATTT
GTAATTAAATTATTAATCCAACCTCTAATTTTCTGGAAAAAAAAAAACAA
AAAAAAATTTGCATGGAAAAATGAACTTTTTCCCTTTCGGCTGTGTTATG
GGAAAGTTTTTTTGTTTCCATCCGGTTAACCTTTCTTTTTCAAAAGAAAA
TGGCCTGGGCCGGAGAACCTTAGGGAACCCTTGGGTTTTTTCTCCCAAAA
AAACATATTTAAAAACCA
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